View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14707_low_6 (Length: 315)

Name: NF14707_low_6
Description: NF14707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14707_low_6
NF14707_low_6
[»] chr8 (12 HSPs)
chr8 (18-299)||(31909125-31909406)
chr8 (18-175)||(3479030-3479186)
chr8 (41-174)||(3785840-3785972)
chr8 (41-174)||(19472533-19472664)
chr8 (41-174)||(19543458-19543589)
chr8 (41-174)||(19589107-19589238)
chr8 (41-138)||(3788550-3788646)
chr8 (18-129)||(35416115-35416228)
chr8 (22-127)||(369296-369401)
chr8 (18-124)||(12062802-12062911)
chr8 (90-138)||(4678097-4678146)
chr8 (90-138)||(4676152-4676201)
[»] chr7 (7 HSPs)
chr7 (18-174)||(2576966-2577122)
chr7 (36-175)||(18446569-18446706)
chr7 (82-174)||(26389160-26389252)
chr7 (18-126)||(1773550-1773661)
chr7 (36-121)||(1715747-1715832)
chr7 (26-73)||(9457682-9457729)
chr7 (129-174)||(1773696-1773741)
[»] chr1 (5 HSPs)
chr1 (26-167)||(16385556-16385696)
chr1 (15-138)||(20225514-20225639)
chr1 (41-177)||(27356069-27356205)
chr1 (20-101)||(20226850-20226932)
chr1 (114-174)||(12685086-12685146)
[»] chr6 (5 HSPs)
chr6 (41-173)||(21146869-21147003)
chr6 (16-129)||(9664656-9664771)
chr6 (16-138)||(787289-787413)
chr6 (41-174)||(33638828-33638960)
chr6 (16-138)||(3074931-3075058)
[»] chr5 (5 HSPs)
chr5 (26-174)||(4215219-4215366)
chr5 (21-142)||(27172855-27172977)
chr5 (85-175)||(18587463-18587554)
chr5 (41-115)||(37498253-37498327)
chr5 (90-138)||(39040636-39040685)
[»] scaffold0016 (1 HSPs)
scaffold0016 (27-174)||(48375-48523)
[»] chr2 (2 HSPs)
chr2 (18-138)||(26608034-26608155)
chr2 (70-174)||(20509185-20509288)
[»] chr3 (8 HSPs)
chr3 (16-127)||(27462140-27462253)
chr3 (18-138)||(24595227-24595349)
chr3 (20-137)||(447100-447217)
chr3 (20-138)||(20868697-20868819)
chr3 (41-138)||(20871335-20871436)
chr3 (80-138)||(35610819-35610878)
chr3 (41-128)||(51308823-51308912)
chr3 (177-213)||(2202937-2202973)
[»] chr4 (3 HSPs)
chr4 (16-138)||(55849443-55849568)
chr4 (25-174)||(46432428-46432576)
chr4 (40-129)||(55852053-55852144)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 31909125 - 31909406
Alignment:
Q  18 atagagagaaaagcttacaaagctattgtattgatgatagttgaaaagatacaaaatgaaagagagaggtacaaatgagtcaacttgtgacttatatagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31909125 atagagagaaaagcttacaaagctattgtattgatgatagttgaaaagatacaaaatgaaagagagaggtacaaatgagtcaacttgtgacttatatagt 31909224  T
Q  118 gactaaactagtaccctaacttactctaaaatgagtattactatctatatttcaacatgattcattaaaatgaatcaggatttatcacagtgaatctgat 217  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  31909225 gactaaactagtaccttaacttactctaaaatgagtattactatctatatttcaacatgattcattagaatgaatcatgatttatcacagtgaatctgat 31909324  T
Q  218 ccatcataatggatcgggttttaagatgatattgatgtctaaaatagctacacaccaaagattcacatcaattgagttcagt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31909325 ccatcataatggatcgggttttaagatgatattgatgtctaaaatagctacacaccaaagattcacatcaattgagttcagt 31909406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 3479186 - 3479030
Alignment:
Q  18 atagagagaaaagcttacaaagctattgtattgatgatagttgaaaagatacaaaa-tgaaagagagaggtacaaatgagtcaacttgtgacttatatag 116  Q
    ||||||| |||| |||| |||  || ||||||||| |||||||||||||| ||| | |||||||| |  ||||||||||||||||||||||||||| |||    
T  3479186 atagagaaaaaaacttaaaaaattactgtattgataatagttgaaaagatgcaacagtgaaagagcg--gtacaaatgagtcaacttgtgacttatgtag 3479089  T
Q  117 tgactaaactagtaccctaacttactctaaaatgagtattactatctatatttcaacat 175  Q
     |||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||    
T  3479088 ggactaaactaataccctaactaactctaaaatgagtataactatctatatttcaacat 3479030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 3785840 - 3785972
Alignment:
Q  41 tattgtattgatgatagttgaaaagatacaa-aatgaaagagagaggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccctaactt 139  Q
    |||||||||||| |||||||||| ||||||| ||| ||| || ||  |||||||||||||||||||||||||||||||||||| | |||||||||||||     
T  3785840 tattgtattgataatagttgaaatgatacaagaataaaaaagtga--tacaaatgagtcaacttgtgacttatatagtgactatagtagtaccctaacta 3785937  T
Q  140 actctaaaatgagtattactatctatatttcaaca 174  Q
    |||||||||||||||| ||||||||||||||||||    
T  3785938 actctaaaatgagtatcactatctatatttcaaca 3785972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 19472533 - 19472664
Alignment:
Q  41 tattgtattgatgatagttgaaaagatacaaaa-tgaaagagagaggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccc-taact 138  Q
    |||| ||||||  |||||||||| ||||||||| ||||||||     |||||| |||||||||||||||| |||||||||||| |||||||||| |||||    
T  19472533 tattatattgaaaatagttgaaatgatacaaaagtgaaagagt----tacaaaagagtcaacttgtgactgatatagtgactacactagtacccttaact 19472628  T
Q  139 tactctaaaatgagtattactatctatatttcaaca 174  Q
     |||||||||||||||||||||||||||||||||||    
T  19472629 aactctaaaatgagtattactatctatatttcaaca 19472664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 19543458 - 19543589
Alignment:
Q  41 tattgtattgatgatagttgaaaagatacaaaa-tgaaagagagaggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccc-taact 138  Q
    |||| ||||||  |||||||||| ||||||||| ||||||||     |||||| |||||||||||||||| |||||||||||| |||||||||| |||||    
T  19543458 tattatattgaaaatagttgaaatgatacaaaagtgaaagagt----tacaaaagagtcaacttgtgactgatatagtgactacactagtacccttaact 19543553  T
Q  139 tactctaaaatgagtattactatctatatttcaaca 174  Q
     |||||||||||||||||||||||||||||||||||    
T  19543554 aactctaaaatgagtattactatctatatttcaaca 19543589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 41 - 174
Target Start/End: Complemental strand, 19589238 - 19589107
Alignment:
Q  41 tattgtattgatgatagttgaaaagatacaaaa-tgaaagagagaggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccct-aact 138  Q
    |||| ||||||  |||||||||| ||||||||| ||||||||     |||||| |||||||||||||||| |||||||||||| ||||||||||| ||||    
T  19589238 tattatattgaaaatagttgaaatgatacaaaagtgaaagagt----tacaaaagagtcaacttgtgactgatatagtgactacactagtacccttaact 19589143  T
Q  139 tactctaaaatgagtattactatctatatttcaaca 174  Q
     |||||||||||||||||||||||||||||||||||    
T  19589142 aactctaaaatgagtattactatctatatttcaaca 19589107  T

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Target: chr8; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 3788550 - 3788646
Alignment:
Q  41 tattgtattgatgatagttgaaaagatacaa-aatgaaagagagaggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccctaact 138  Q
    |||||||||||| |||||||||| ||||||| ||||||| || ||  |||||||| |||||||||||||||||| |||||||| |||||||||||||||    
T  3788550 tattgtattgataatagttgaaatgatacaagaatgaaaaagtga--tacaaatgggtcaacttgtgacttatacagtgactatactagtaccctaact 3788646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 35416115 - 35416228
Alignment:
Q  18 atagagagaaaagcttacaaagctattgtattgatgatagttgaaaagatacaa-aatgaaagagagaggtacaaatgagtcaa-cttgtgacttatata 115  Q
    ||||||||||||||||  ||| |||||||||| ||| ||||||||| ||||||| ||||||  ||| | ||||||||||||||| | |||||||||||||    
T  35416115 atagagagaaaagcttgaaaaactattgtattaatggtagttgaaatgatacaataatgaagaagataagtacaaatgagtcaaccatgtgacttatata 35416214  T
Q  116 gtgactaaactagt 129  Q
    || |||||||||||    
T  35416215 gtcactaaactagt 35416228  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 369401 - 369296
Alignment:
Q  22 agagaaaagcttacaaagctattgtattgatgatagttgaaaagatac-aaaatgaaagagagaggtacaaatgagtcaa-cttgtgacttatatagtga 119  Q
    |||||||| |||||||  |||||||||||||||||||||||||||||| ||||| |||||||  ||||||||| || ||| | | |||||||| |||| |    
T  369401 agagaaaaacttacaa--ctattgtattgatgatagttgaaaagatacaaaaataaaagagatcggtacaaattagccaaccatatgacttatttagtaa 369304  T
Q  120 ctaaacta 127  Q
    ||||||||    
T  369303 ctaaacta 369296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 12062911 - 12062802
Alignment:
Q  18 atagagagaaaagcttacaaagctattgtattgatgatagttgaaaa-gatacaa-aatgaaagagagaggtacaaatgagtcaa-cttgtgacttatat 114  Q
    ||||||||||||||||| ||| ||||| | |||||||| ||||||||  |||||| |||||||||    |||||||||||||||| | ||||||||||||    
T  12062911 atagagagaaaagcttagaaaactattctcttgatgatggttgaaaataatacaagaatgaaagatgtgggtacaaatgagtcaaccatgtgacttatat 12062812  T
Q  115 agtgactaaa 124  Q
    ||| ||||||    
T  12062811 agtaactaaa 12062802  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 4678146 - 4678097
Alignment:
Q  90 aaatgagtcaac-ttgtgacttatatagtgactaaactagtaccctaact 138  Q
    |||||||||||| |||||||||||||||| ||||||||||||| ||||||    
T  4678146 aaatgagtcaaccttgtgacttatatagtaactaaactagtactctaact 4678097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 4676201 - 4676152
Alignment:
Q  90 aaatgagtcaact-tgtgacttatatagtgactaaactagtaccctaact 138  Q
    ||||||||||||  ||||||||||||||| ||||||||||||| ||||||    
T  4676201 aaatgagtcaaccctgtgacttatatagtaactaaactagtactctaact 4676152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 2577122 - 2576966
Alignment:
Q  18 atagagagaa-aagcttacaaagctattgtattgatgatagttgaaaagatacaa-aatgaaagagagaggtacaaatgagtcaacttgtgacttatata 115  Q
    |||||||||| ||||||| |||  |||||||||||| |||||||||| ||||||| ||||||| || ||  |||||||||||||||||||||||||||||    
T  2577122 atagagagaagaagcttagaaaattattgtattgataatagttgaaatgatacaagaatgaaaaagtga--tacaaatgagtcaacttgtgacttatata 2577025  T
Q  116 gtgactaaactagtaccctaacttactctaaaatgagtattactatctatatttcaaca 174  Q
    ||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  2577024 gtgactatactagtaccctaactaactctaaaatgagtatcactatctatatttcaaca 2576966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 175
Target Start/End: Complemental strand, 18446706 - 18446569
Alignment:
Q  36 aaagctattgtattgatgatagttgaaaagatacaaaa-tgaaagagagaggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccct 134  Q
    ||||||||||||||||| |||||||||| ||||||||| ||||||| |||  |||||| || |||||| |||||||||||||||||| ||||||| | ||    
T  18446706 aaagctattgtattgataatagttgaaatgatacaaaagtgaaagaaaga--tacaaa-gaatcaactagtgacttatatagtgactgaactagtgcact 18446610  T
Q  135 aacttactctaaaatgagtattactatctatatttcaacat 175  Q
    |||| |||||||||||||||| |||| ||||||||||||||    
T  18446609 aactaactctaaaatgagtataactaactatatttcaacat 18446569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 26389252 - 26389160
Alignment:
Q  82 agaggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccctaacttactctaaaatgagtattactatctatatttcaaca 174  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| |||||||||||||    
T  26389252 agagatacaaaagagtcaacttgtgacttatatagtgactaaactagtacactaactaactctaaaatgagtataactacctatatttcaaca 26389160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 1773550 - 1773661
Alignment:
Q  18 atagagag-aaaagcttacaaagctattgtattgatgatagttgaaaagatacaaaatgaaa-gagagaggtacaaatgagtcaact-tgtgacttatat 114  Q
    |||||||| |||||||||||||| |||||||||||| ||||| |||| |||| | |   ||| || |||| |||||||||||||||| ||||||| ||||    
T  1773550 atagagagtaaaagcttacaaagttattgtattgataatagtagaaatgatatatacaaaaatgaaagagatacaaatgagtcaactctgtgactaatat 1773649  T
Q  115 agtgactaaact 126  Q
    ||||||||||||    
T  1773650 agtgactaaact 1773661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 1715747 - 1715832
Alignment:
Q  36 aaagctattgtattgatgatagttgaaaagatacaaaa-tgaaagagagaggtacaaatgagtcaacttgtgacttatatagtgact 121  Q
    |||| |||||||||||| |||||||||| |||| |||| ||||| |||||| |||||| ||||||||| || |||||||||||||||    
T  1715747 aaagttattgtattgataatagttgaaatgatataaaagtgaaa-agagagatacaaaagagtcaactagtaacttatatagtgact 1715832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 9457729 - 9457682
Alignment:
Q  26 aaaagcttacaaagctattgtattgatgatagttgaaaagatacaaaa 73  Q
    |||| ||||||||||||||||||||||||||||| ||| |||||||||    
T  9457729 aaaaacttacaaagctattgtattgatgatagttaaaatgatacaaaa 9457682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 1773696 - 1773741
Alignment:
Q  129 taccctaacttactctaaaatgagtattactatctatatttcaaca 174  Q
    |||||||||| |||||||||||||||| |||| ||||| |||||||    
T  1773696 taccctaactaactctaaaatgagtataactacctataattcaaca 1773741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 26 - 167
Target Start/End: Complemental strand, 16385696 - 16385556
Alignment:
Q  26 aaaagcttacaaagctattgtattgatgatagttgaaaagatacaaaa-tgaaagagagaggtacaaatgagtcaacttgtgacttatatagtgactaaa 124  Q
    |||||||||||||| |||||||||||| ||||   ||| ||||||||| |||||||||   |||||||||||||||||||||||||||| ||||||||||    
T  16385696 aaaagcttacaaagttattgtattgattatagggaaaatgatacaaaaatgaaagagat--gtacaaatgagtcaacttgtgacttatacagtgactaaa 16385599  T
Q  125 ctagtaccctaacttactctaaaatgagtattactatctatat 167  Q
    |||||||||||||| |||||||||||||||| |||||||||||    
T  16385598 ctagtaccctaactaactctaaaatgagtataactatctatat 16385556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 20225514 - 20225639
Alignment:
Q  15 aatatagagagaaaagcttacaaagctattgtattgatgatagttgaaaagatacaa-aatgaaagagagaggtacaaatgagtcaa-cttgtgacttat 112  Q
    ||||||||||||||||||| |||| ||||||||||||||||| |||||| ||||||| |||| || ||| ||||||||| ||||||| | ||||||||||    
T  20225514 aatatagagagaaaagcttgcaaaactattgtattgatgataattgaaatgatacaagaatggaaaagataggtacaaaagagtcaaccatgtgacttat 20225613  T
Q  113 atagtgactaaactagtaccctaact 138  Q
    ||||| |||||||||||  |||||||    
T  20225614 atagtaactaaactagtgtcctaact 20225639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 27356069 - 27356205
Alignment:
Q  41 tattgtattgatgatagttgaaaagatac-aaaatgaaagagagaggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccctaactt 139  Q
    ||||||||||||||||||  ||| ||||| |||||||||||||||  |||| || | ||||||| || |||||| |||||||||| |||||| ||||||     
T  27356069 tattgtattgatgatagtgaaaatgatacaaaaatgaaagagaga--tacatataattcaacttatgtcttatacagtgactaaattagtacactaacta 27356166  T
Q  140 actct-aaaatgagtattactatctatatttcaacatga 177  Q
    || || ||||||| ||| |||| |||||||| |||||||    
T  27356167 acactaaaaatgactataactacctatattttaacatga 27356205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 20226850 - 20226932
Alignment:
Q  20 agagagaaaagcttacaaagctattgtattgatgatagttgaaaagatacaa-aatgaaagagagaggtacaaatgagtcaac 101  Q
    ||||||||||| ||  ||| ||||||||||||||||| |||||| ||||||| ||||||| ||| ||||||||| ||||||||    
T  20226850 agagagaaaagtttgaaaaactattgtattgatgataattgaaatgatacaagaatgaaaaagataggtacaaaagagtcaac 20226932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 12685146 - 12685086
Alignment:
Q  114 tagtgactaaactagtaccctaacttactctaaaatgagtattactatctatatttcaaca 174  Q
    |||||||| |||| |||| |||||| |||||||||||||||| |||| |||||||||||||    
T  12685146 tagtgactgaactcgtacactaactaactctaaaatgagtataactaactatatttcaaca 12685086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 41 - 173
Target Start/End: Original strand, 21146869 - 21147003
Alignment:
Q  41 tattgtattgatgatagttgaaaagatacaa-aatgaaagagagaggtacaaatgagtcaacttgtgacttatat--agtgactaaactagtaccctaac 137  Q
    |||||||||||  |||||||||| ||||||| ||||||| |||||||||||||||||||||| |||||||||||   | |||| ||||||||||||||||    
T  21146869 tattgtattgaaaatagttgaaatgatacaagaatgaaa-agagaggtacaaatgagtcaacatgtgacttatagtcattgacaaaactagtaccctaac 21146967  T
Q  138 ttactctaaaatgagtattactatctatatttcaac 173  Q
    | ||| |||||||||||| |||||||||||||||||    
T  21146968 taactttaaaatgagtataactatctatatttcaac 21147003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 9664656 - 9664771
Alignment:
Q  16 atatagagagaaaagcttacaaagctattgtattgatgatagttgaaaagatacaa-aatgaaagagagaggtacaaatgagtcaa-cttgtgacttata 113  Q
    ||||||||||||||||||  ||| ||||||||||||| |||||||||| ||||||| ||||||| ||| ||||||||||||||||| | |||||||||||    
T  9664656 atatagagagaaaagcttgaaaaactattgtattgattatagttgaaatgatacaagaatgaaaaagataggtacaaatgagtcaaccatgtgacttata 9664755  T
Q  114 tagtgactaaactagt 129  Q
    |||| |||||||||||    
T  9664756 tagtaactaaactagt 9664771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 787413 - 787289
Alignment:
Q  16 atatagagagaaaagcttacaaagctattgtattgatgatagttgaaaagatacaa-aatgaaagagagaggtacaaatgagtcaa-cttgtgacttata 113  Q
    ||||||||||||||| ||  ||| ||||||||||||||||| |||||| ||||||| ||||| | |||  |||||||||||||||| | | |||||||||    
T  787413 atatagagagaaaagtttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcggtacaaatgagtcaatcatatgacttata 787314  T
Q  114 tagtgactaaactagtaccctaact 138  Q
    |||| |||||||||||  |||||||    
T  787313 tagtaactaaactagtgtcctaact 787289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 174
Target Start/End: Original strand, 33638828 - 33638960
Alignment:
Q  41 tattgtattgatgatagttgaaaagatacaaaatgaaagagagaggtacaaatgagtcaacttgtgacttatatagtgactaaactagtaccctaactta 140  Q
    |||||| ||||| ||| ||||| ||||||||||   || |||||| |||||| |||||||||| |||||||||||  || ||||||| ||| |||||| |    
T  33638828 tattgtcttgataataattgaagagatacaaaagttaaaagagagatacaaaagagtcaacttatgacttatataacgattaaactaatacactaactaa 33638927  T
Q  141 ctctaaaatgagtattactatctatatttcaaca 174  Q
    ||||||||| ||||| |||  |||||||||||||    
T  33638928 ctctaaaataagtataact-cctatatttcaaca 33638960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 3075058 - 3074931
Alignment:
Q  16 atatagagagaaaagcttacaaagctattgta-ttgatgatagttgaaaagatacaa-aatgaaagagagaggtacaaatgagtcaa-cttgtgact--t 110  Q
    ||||||||||||||||||  ||| |||||||| |||||||||||||||| |||| || |||| || ||| || |||||||||| ||| | ||||| |  |    
T  3075058 atatagagagaaaagcttggaaaactattgtatttgatgatagttgaaatgatataagaatggaaaagatagatacaaatgagacaaccatgtgatttat 3074959  T
Q  111 atatagtgactaaactagtaccctaact 138  Q
    ||||||| |||||||||||  |||||||    
T  3074958 atatagtaactaaactagtgtcctaact 3074931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 4215366 - 4215219
Alignment:
Q  26 aaaagcttacaaagctattgtattgatgatagttgaaaagatacaaaa-tgaaagagagaggtacaaatgagtcaacttgtgacttatatagtgactaaa 124  Q
    ||||||||| |||| |||||||||||| |||||||||| |||| |||| ||||| |||||| |||||| |||||||||  ||||||||||||||||| ||    
T  4215366 aaaagcttagaaagttattgtattgataatagttgaaatgatataaaagtgaaa-agagagatacaaaagagtcaactaatgacttatatagtgactcaa 4215268  T
Q  125 ctagtaccctaacttactctaaaatgagtattactatctatatttcaaca 174  Q
    ||||| | |||||| ||||| |||||||||| |||| |||||||||||||    
T  4215267 ctagtgcactaactaactct-aaatgagtataactaactatatttcaaca 4215219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 27172855 - 27172977
Alignment:
Q  21 gagagaaaagcttacaaagctattgtattgatgatagttgaaaagatacaa-aatgaaagagagaggtacaaatgagtcaacttgtgacttatatagtga 119  Q
    |||||||||||||  ||| ||||| |||||||||||||||||| ||||||| |||| || ||| || ||||||||||||| ||  ||||||||||||| |    
T  27172855 gagagaaaagcttggaaaactattctattgatgatagttgaaatgatacaagaatggaaaagatagttacaaatgagtcacctaatgacttatatagtaa 27172954  T
Q  120 ctaaactagtaccctaacttact 142  Q
    ||||||||||| |||||||||||    
T  27172955 ctaaactagtatcctaacttact 27172977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 18587463 - 18587554
Alignment:
Q  85 ggtacaaatgagtcaac-ttgtgacttatatagtgactaaactagtaccctaacttactctaaaatgagtattactatctatatttcaacat 175  Q
    ||||||||||| ||||| |||||||||||||||| ||  |||||||||||||||| |||||||||| ||||| |||| ||||||||||||||    
T  18587463 ggtacaaatgaatcaaccttgtgacttatatagtaacctaactagtaccctaactaactctaaaataagtataactacctatatttcaacat 18587554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 37498253 - 37498327
Alignment:
Q  41 tattgtattgatgatagttgaaaagatacaaaa-tgaaagagagaggtacaaatgagtcaacttgtgacttatata 115  Q
    ||||||||||||||||||||||| |||| |||| | ||||| || |||||||||||||||||||||||||||||||    
T  37498253 tattgtattgatgatagttgaaatgatataaaagtaaaaga-aggggtacaaatgagtcaacttgtgacttatata 37498327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 39040636 - 39040685
Alignment:
Q  90 aaatgagtcaac-ttgtgacttatatagtgactaaactagtaccctaact 138  Q
    |||||||||||| |||||||||||||||| ||||||||||||| ||||||    
T  39040636 aaatgagtcaaccttgtgacttatatagtaactaaactagtactctaact 39040685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 48523 - 48375
Alignment:
Q  27 aaagcttacaaagctattgtattgatgatagttgaaaagatacaaaatgaaagagagaggtacaaatgagtcaacttgtgacttatatagtgactaaact 126  Q
    |||||||| |||  |||||||||||| || ||||||  ||||||||||  || ||| || |||||| || ||||||||||||||||||||||| || |||    
T  48523 aaagcttagaaaattattgtattgataattgttgaagggatacaaaattgaaaagatagttacaaaagaatcaacttgtgacttatatagtgaatacact 48424  T
Q  127 agtaccc-taacttactctaaaatgagtattactatctatatttcaaca 174  Q
    | ||||| ||||| |||||||||||||||| |||| |||||||||||||    
T  48423 aatacccttaactaactctaaaatgagtataactacctatatttcaaca 48375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 26608034 - 26608155
Alignment:
Q  18 atagagagaaaagcttacaaagctattgtattgatgatagttgaaaa-gatacaa-aatgaaagagagaggtacaaatgagtcaac-ttgtgacttatat 114  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||| ||||||| ||||||| ||| ||||||| |||||||||| |||||||||||||    
T  26608034 atagagagaaaagcttagaaa--tattgtattgatgatagttgaaaatgatacaagaatgaaaaagataggtacagatgagtcaaccttgtgacttatat 26608131  T
Q  115 agtgactaaactagtaccctaact 138  Q
    ||| ||| |||||||| |||||||    
T  26608132 agtaactgaactagtatcctaact 26608155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 70 - 174
Target Start/End: Original strand, 20509185 - 20509288
Alignment:
Q  70 aaaatgaaagagagaggtacaaatgagtcaacttgtgacttatatagtgactaaactagta-ccctaacttactctaaaatgagtattactatctatatt 168  Q
    |||||||||||||||  || |||||||||||||||| ||||||||| |||||||||||||| |||||||| |||||||||||||||| ||||  ||||||    
T  20509185 aaaatgaaagagaga--tataaatgagtcaacttgtaacttatatattgactaaactagtacccctaactaactctaaaatgagtataactacttatatt 20509282  T
Q  169 tcaaca 174  Q
    | ||||    
T  20509283 ttaaca 20509288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 27462253 - 27462140
Alignment:
Q  16 atatagagagaaaagcttacaaagctattgtattgatgatagttgaaaagatacaa-aatgaaagagagaggtacaaatgagtcaa-cttgtgacttata 113  Q
    ||||||||||||||||||  ||| ||||||||||||| |||||||||| ||||||| ||||||| ||| ||||||||||||||||| | | |||||||||    
T  27462253 atatagagagaaaagcttggaaaactattgtattgattatagttgaaatgatacaagaatgaaaaagataggtacaaatgagtcaaccatatgacttata 27462154  T
Q  114 tagtgactaaacta 127  Q
    |||| |||||||||    
T  27462153 tagtaactaaacta 27462140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 24595349 - 24595227
Alignment:
Q  18 atagagagaaaagcttacaaagctattgtattgatgatagttgaaaa-gatacaa-aatgaaagagagaggtacaaatgagtcaa-cttgtgacttatat 114  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||||||| |||   ||||||||||||||| | ||||||||||||    
T  24595349 atagagagaaaagcttagaaa-ctattgtattgatgatagttgaaaatgatacaagaatgaaaaagattagtacaaatgagtcaaccatgtgacttatat 24595251  T
Q  115 agtgactaaactagtaccctaact 138  Q
    ||| |||||||||||  |||||||    
T  24595250 agtaactaaactagtgtcctaact 24595227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 447100 - 447217
Alignment:
Q  20 agagagaaaagcttacaaagctattgtattgatgatagttgaaaagata-caaaatgaaagagagaggtacaaatgagtcaac-ttgtgacttatatagt 117  Q
    ||||| |||| ||||||||||| ||||||| ||| ||||||||| ||||  ||||||||  |||||||||||||||||||||| ||||||||| ||||||    
T  447100 agagaaaaaaacttacaaagctgttgtatttatggtagttgaaatgatagaaaaatgaa--agagaggtacaaatgagtcaactttgtgacttctatagt 447197  T
Q  118 gactaaactagtaccctaac 137  Q
      ||||||||||||||||||    
T  447198 atctaaactagtaccctaac 447217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 20868819 - 20868697
Alignment:
Q  20 agagagaaaagcttacaaagctattgtattgatgatagttgaa-aagatacaa-aatgaaagagagaggtacaaatgagtcaa-cttgtgacttatatag 116  Q
    ||||||||||||||| ||| ||||||||||||||||||||||| |  |||||| ||||||| ||| |||||||||| |||||| | ||||||||||||||    
T  20868819 agagagaaaagcttagaaaactattgtattgatgatagttgaacataatacaagaatgaaaaagataggtacaaataagtcaaccatgtgacttatatag 20868720  T
Q  117 tgact-aaactagtaccctaact 138  Q
    | ||| ||||||||| |||||||    
T  20868719 taactaaaactagtatcctaact 20868697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 138
Target Start/End: Complemental strand, 20871436 - 20871335
Alignment:
Q  41 tattgtattgatgatagttgaaaa-gatacaa-aatgaaagagagaggtacaaatgagtcaa-cttgtgacttatatagtgact-aaactagtaccctaa 136  Q
    ||||||||||||||||||||||||  |||||| ||||||| ||| ||||||||||||||||| | ||||||||||||||| ||| ||||||||| |||||    
T  20871436 tattgtattgatgatagttgaaaataatacaagaatgaaaaagataggtacaaatgagtcaaccatgtgacttatatagtaactaaaactagtatcctaa 20871337  T
Q  137 ct 138  Q
    ||    
T  20871336 ct 20871335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 35610878 - 35610819
Alignment:
Q  80 agagaggtacaaatgagtcaac-ttgtgacttatatagtgactaaactagtaccctaact 138  Q
    ||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  35610878 agagatgtacaaatgagtcaaccttgtgacttatatagtaactaaactagtaccctaact 35610819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 51308912 - 51308823
Alignment:
Q  41 tattgtattgatgatagttgaaaagatacaa-aatgaaagagagaggtacaaatgagtcaa-cttgtgacttatatagtgactaaactag 128  Q
    |||||||||||| |||||||||| ||||||| ||| |||||||   ||||||||||||||| | ||||||||||||||| |||| |||||    
T  51308912 tattgtattgataatagttgaaatgatacaagaataaaagagattagtacaaatgagtcaaccatgtgacttatatagtaactacactag 51308823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 2202973 - 2202937
Alignment:
Q  177 attcattaaaatgaatcaggatttatcacagtgaatc 213  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  2202973 attcattaaaatgaatcgggatttatcatagtgaatc 2202937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 55849443 - 55849568
Alignment:
Q  16 atatagagagaaaagcttac-aaagctattgtattgatgatagttgaaaagatacaa-aatgaaagagagaggtacaaatgagtcaa-cttgtgacttat 112  Q
    ||||||||||||||||||   ||| |||||||||||||||||||||||| ||||||| |||| || ||| ||||||||||||||||| | ||||||||||    
T  55849443 atatagagagaaaagcttgggaaaactattgtattgatgatagttgaaatgatacaagaatggaaaagataggtacaaatgagtcaaccatgtgacttat 55849542  T
Q  113 atagtgactaaactagtaccctaact 138  Q
    ||||| ||| |||||||  |||||||    
T  55849543 atagtaactgaactagtgtcctaact 55849568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 46432576 - 46432428
Alignment:
Q  25 gaaaagcttacaaagctattgtattgatgatagttgaaaagatacaaaa-tgaaagagagaggtacaaatgagtcaacttgtgacttatatagtgactaa 123  Q
    ||||||||||||||  |||||||||||| |||||  ||| ||||||||| |||||||| ||  || ||| ||||||||| ||||||| ||  ||||||||    
T  46432576 gaaaagcttacaaaattattgtattgataatagtaaaaatgatacaaaagtgaaagaggga--tataaaagagtcaactagtgacttttacggtgactaa 46432479  T
Q  124 actagtaccctaacttactctaaaatgagtattactatctatatttcaaca 174  Q
    | |||| | |||||| |||||||||||||||| |||| ||| |||| ||||    
T  46432478 attagtgcactaactaactctaaaatgagtataactaactacattttaaca 46432428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 55852053 - 55852144
Alignment:
Q  40 ctattgtattgatgatagttgaaaagatacaa-aatgaaagagagaggtacaaatgagtcaa-cttgtgacttatatagtgactaaactagt 129  Q
    |||||||||||||||||||||||| ||||||| |||| || ||| |  |||||||||||||| | ||| | ||||||||| ||||| |||||    
T  55852053 ctattgtattgatgatagttgaaatgatacaagaatgtaaaagataactacaaatgagtcaaccatgttagttatatagtaactaatctagt 55852144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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