View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14707_low_7 (Length: 265)

Name: NF14707_low_7
Description: NF14707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14707_low_7
NF14707_low_7
[»] chr8 (2 HSPs)
chr8 (152-246)||(7021761-7021855)
chr8 (76-151)||(7021911-7021986)
[»] chr2 (1 HSPs)
chr2 (159-220)||(10541770-10541831)


Alignment Details
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 152 - 246
Target Start/End: Complemental strand, 7021855 - 7021761
Alignment:
Q  152 atcaataactttcaataactctttacaaaaagcgaatcaaatcaatccatcaattgaatcaacttatattatactattgatgatcatgtatacaa 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7021855 atcaataactttcaataactctttacaaaaagcgaatcaaatcaatccatcaattgaatcaacttatattatactattgatgatcatgtatacaa 7021761  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 7021986 - 7021911
Alignment:
Q  76 taatgaaatctattttttgcttttcaaacaaacaaaagaagacaataacgtgcgttacgtatatgacatgtacagt 151  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7021986 taatgaaatctattttttgtttttcaaacaaacaaaagaagacaataacgtgcgttacgtatatgacatgtacagt 7021911  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 10541831 - 10541770
Alignment:
Q  159 actttcaataactctttacaaaaagcgaatcaaatcaatccatcaattgaatcaacttatat 220  Q
    |||||||||||||||||  | || |||||| ||||||||||| | ||||||||| |||||||    
T  10541831 actttcaataactctttgtagaaggcgaattaaatcaatccaactattgaatcatcttatat 10541770  T

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