View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14707_low_8 (Length: 259)

Name: NF14707_low_8
Description: NF14707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14707_low_8
NF14707_low_8
[»] chr7 (9 HSPs)
chr7 (69-259)||(7907430-7907622)
chr7 (100-259)||(45837816-45837978)
chr7 (20-85)||(7907346-7907411)
chr7 (96-259)||(32786794-32786960)
chr7 (117-188)||(5528294-5528365)
chr7 (20-82)||(7897695-7897756)
chr7 (131-258)||(39837393-39837522)
chr7 (112-254)||(2033631-2033775)
chr7 (103-259)||(28337215-28337374)
[»] chr4 (11 HSPs)
chr4 (96-259)||(50297628-50297794)
chr4 (96-257)||(54997695-54997860)
chr4 (117-259)||(32895471-32895615)
chr4 (120-259)||(31690582-31690722)
chr4 (87-177)||(36989828-36989919)
chr4 (112-259)||(28675676-28675825)
chr4 (96-208)||(27918380-27918493)
chr4 (96-258)||(14138979-14139144)
chr4 (147-259)||(29508720-29508834)
chr4 (168-259)||(14603008-14603101)
chr4 (224-259)||(41460529-41460565)
[»] scaffold0542 (1 HSPs)
scaffold0542 (82-259)||(4505-4684)
[»] chr1 (7 HSPs)
chr1 (96-208)||(4658677-4658789)
chr1 (96-258)||(5799731-5799896)
chr1 (96-233)||(31262562-31262702)
chr1 (96-259)||(41884610-41884776)
chr1 (96-177)||(1035572-1035654)
chr1 (165-257)||(8644680-8644773)
chr1 (127-188)||(48149250-48149311)
[»] chr2 (11 HSPs)
chr2 (96-250)||(20061055-20061212)
chr2 (172-253)||(1705047-1705130)
chr2 (96-259)||(14275760-14275925)
chr2 (96-250)||(39420193-39420350)
chr2 (158-233)||(42184863-42184939)
chr2 (96-177)||(2889110-2889192)
chr2 (192-259)||(13242226-13242295)
chr2 (147-256)||(36528403-36528514)
chr2 (72-180)||(2641426-2641535)
chr2 (131-234)||(36285005-36285109)
chr2 (224-259)||(44721344-44721380)
[»] chr8 (6 HSPs)
chr8 (96-233)||(31313311-31313450)
chr8 (96-259)||(40505246-40505411)
chr8 (96-259)||(6530310-6530476)
chr8 (96-176)||(5493362-5493443)
chr8 (192-259)||(15067673-15067742)
chr8 (224-259)||(38869903-38869939)
[»] chr6 (2 HSPs)
chr6 (117-200)||(10960554-10960637)
chr6 (224-259)||(154333-154369)
[»] chr3 (6 HSPs)
chr3 (117-232)||(37919184-37919299)
chr3 (117-229)||(48192590-48192702)
chr3 (129-255)||(54787794-54787922)
chr3 (110-177)||(4539875-4539942)
chr3 (117-258)||(13637916-13638059)
chr3 (224-259)||(24355448-24355484)
[»] chr5 (1 HSPs)
chr5 (82-177)||(41144656-41144752)
[»] scaffold0005 (1 HSPs)
scaffold0005 (168-259)||(214277-214370)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 69 - 259
Target Start/End: Original strand, 7907430 - 7907622
Alignment:
Q  69 aattatatatatattttttg-caaataataacttgtgccctcaaggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaa 167  Q
    |||||||||||||||||||| |||||  |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||| |||    
T  7907430 aattatatatatattttttggcaaatgttaacttgtgccctcaaggcacatgttaagatactcattatagaaatagacatatcaaaaaccatgcattcaa 7907529  T
Q  168 cttcttaaaaattgtcatattgtattttccaatgcaaaattacttttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 259  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  7907530 cttcttaaaaattgttatattgtattttccaatgcaaaattacttttttaggttgcttaacatgtgccttaagggcacaagttaacatgaccc 7907622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 259
Target Start/End: Original strand, 45837816 - 45837978
Alignment:
Q  100 ttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttcca 198  Q
    |||||||| ||||| || |||||||||||||||||||| ||||| ||||||||||  |||||||| |||||| |||||| |||||||||||| |||||||    
T  45837816 ttgtgcccacaagggcacatgttaagatactcattatagaaatacacatatcaaacggcgtgcattcaacttattaaaagttgtcatattgtgttttcca 45837915  T
Q  199 atgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 259  Q
    ||||||| || || ||||||| ||| |||||||||| | ||||||||||||||| ||||||||    
T  45837916 atgcaaagttgctctttttagattgcttaacatgtgccctaagggcacaagttagcatgaccc 45837978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 7907346 - 7907411
Alignment:
Q  20 attagaaagggggattttatgaagtcagttttaccggttgtcctaagaaaattatatatatatttt 85  Q
    ||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||    
T  7907346 attagaaagggggattttatgaagtcagttttatcagttggcctaagaaaattatatatatatttt 7907411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 259
Target Start/End: Original strand, 32786794 - 32786960
Alignment:
Q  96 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 194  Q
    |||||||||||||||||| || ||||||||  |||||||||| ||||| || ||||||||  ||||||| ||||||||||||| ||   ||||| | |||    
T  32786794 taacttgtgccctcaagggcacatgttaaggaactcattatataaatatacgtatcaaaagtcgtgcattcaacttcttaaaagttaaaatattatgttt 32786893  T
Q  195 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 259  Q
    |||||| |||| || || ||||  ||||  |||||||||| | | ||||||||||||| ||||||||    
T  32786894 tccaatacaaagttgctcttttcgggttccttaacatgtgcccttagggcacaagttagcatgaccc 32786960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 5528294 - 5528365
Alignment:
Q  117 atgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatatt 188  Q
    |||||||||| ||||||||||||||| |||||| ||||| ||| ||| |||||||||||||  |||||||||    
T  5528294 atgttaagattctcattataaaaatacacatattaaaaatcgtacattcaacttcttaaaagctgtcatatt 5528365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 7897695 - 7897756
Alignment:
Q  20 attagaaagggggattttatgaagtcagttttaccggttgtcctaagaaaattatatatatat 82  Q
    |||||||||||||||||||||||||||||| || | ||||||| ||| |||||||||||||||    
T  7897695 attagaaagggggattttatgaagtcagttctatcagttgtccgaag-aaattatatatatat 7897756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 258
Target Start/End: Complemental strand, 39837522 - 39837393
Alignment:
Q  131 attataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaaca 229  Q
    |||||| ||||| || ||||||||  ||||||| ||||||||||||| ||| | |||| |||||| || |||||| || || ||||||| ||  ||||||    
T  39837522 attatagaaatacacgtatcaaaagtcgtgcattcaacttcttaaaagttgacctattatatttttcagtgcaaagttgctatttttagattatttaaca 39837423  T
Q  230 tgtg-cttaagggcacaagttaacatgacc 258  Q
    | || | |||||||||||||||||||||||    
T  39837422 tatgccctaagggcacaagttaacatgacc 39837393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 254
Target Start/End: Original strand, 2033631 - 2033775
Alignment:
Q  112 ggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact 211  Q
    |||| |||||||||  || |||||| ||||| |  ||| |||||  |||||| |||||| |||||| |||  || || |||||| ||||||||||||| |    
T  2033631 ggcacatgttaagaaccttattatagaaatacatttataaaaaattgtgcattcaactttttaaaagttgatatgttatatttttcaatgcaaaattatt 2033730  T
Q  212 tttttag-gttggttaacatgtg-cttaagggcacaagttaacat 254  Q
    ||||| | |||| |||||||||| ||||| |||| ||||||||||    
T  2033731 ttttttgagttgtttaacatgtgccttaaaggcataagttaacat 2033775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 259
Target Start/End: Original strand, 28337215 - 28337374
Alignment:
Q  103 tgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatg 201  Q
    ||||||||||| || ||||||||| |||||||||| ||||| |  ||| ||||| ||||||  ||||||||||||| ||   ||| | |||||| |||||    
T  28337215 tgccctcaagggcacatgttaagaaactcattatagaaatatatgtataaaaaatcgtgcaatcaacttcttaaaagttaaaatactatatttttcaatg 28337314  T
Q  202 caaaattact-tttttaggttggttaacatgt-gcttaagggcacaagttaacatgaccc 259  Q
    |||| || || ||||||| ||  |||||||||  ||| |||||| || ||||||||||||    
T  28337315 caaagttgctctttttagattccttaacatgtacctttagggcataatttaacatgaccc 28337374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 96 - 259
Target Start/End: Complemental strand, 50297794 - 50297628
Alignment:
Q  96 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 194  Q
    |||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||| |||||||||||| |||    
T  50297794 taacttgtgccctcaagggcacatgttaagatactcattatagaaatacacatatcaaaaggcgtgcattcaacttcttaaaagttgtcatattgtgttt 50297695  T
Q  195 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 259  Q
    ||||||||||||||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||||    
T  50297694 tccaatgcaaaattactcttttttggttgcttaacatgtgccctaagggcacaagttaacatgaccc 50297628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 96 - 257
Target Start/End: Complemental strand, 54997860 - 54997695
Alignment:
Q  96 taacttgtgccctcaa-ggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattg-tatt 193  Q
    ||||||||||| |||| |||| |||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||| |||| ||||||   ||    
T  54997860 taacttgtgccatcaatggcacatgttaagatactcattatagaaataaacatatcaaaatgcgtgcattcaacttcttaaaagttgtaatattgcgttt 54997761  T
Q  194 ttccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgac 257  Q
    ||||||||||||||| || ||||||||||| |||||||||| | ||| | ||||||||||||||||    
T  54997760 ttccaatgcaaaattgctctttttaggttgcttaacatgtgccctaatgacacaagttaacatgac 54997695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 259
Target Start/End: Complemental strand, 32895615 - 32895471
Alignment:
Q  117 atgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttt 215  Q
    ||||||| ||| |||||||||||||| |||||| ||||  |||| ||  ||||| |||||| |||||||||||||||||| |||||||||||| | ||||    
T  32895615 atgttaaaatattcattataaaaatacacatattaaaagacgtgtatttaactttttaaaagttgtcatattgtattttctaatgcaaaattattatttt 32895516  T
Q  216 taggttggttaacatgtgct-taagggcacaagttaacatgaccc 259  Q
    || |||| |||||||||||| ||||   |||||||||||| ||||    
T  32895515 taagttgtttaacatgtgctctaagaatacaagttaacataaccc 32895471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 259
Target Start/End: Original strand, 31690582 - 31690722
Alignment:
Q  120 ttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttag 218  Q
    |||||||||| |||||| ||||| |||||| |||| | |||||| || |||||||||| |||||||||||| ||||  |||||||||||  | |||||||    
T  31690582 ttaagatacttattatagaaatacacatattaaaatgtgtgcattcagcttcttaaaagttgtcatattgtgtttt-taatgcaaaattgttctttttag 31690680  T
Q  219 gttggttaacatg-tgcttaagggcacaagttaacatgaccc 259  Q
     ||| |||||||| | ||||||||||||||||| ||||||||    
T  31690681 attgcttaacatgttccttaagggcacaagttagcatgaccc 31690722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 36989828 - 36989919
Alignment:
Q  87 tgcaaataataacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaa 177  Q
    |||||||  ||||||||| |||||||| || || |||||| |||||||||||||||| |||||| ||||  ||||||| |||||||||||||    
T  36989828 tgcaaatgttaacttgtgtcctcaagggcacatattaagaaactcattataaaaatatacatattaaaagtcgtgcattcaacttcttaaaa 36989919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 259
Target Start/End: Complemental strand, 28675825 - 28675676
Alignment:
Q  112 ggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact 211  Q
    |||| ||||||||  | |||||||| ||||| |||||||||||    ||||| |||||  |||||| | |  ||||| | ||||| ||||||||||| ||    
T  28675825 ggcacatgttaaggaagtcattatagaaatatacatatcaaaatttttgcattcaactgtttaaaagtcgatatattatgttttctaatgcaaaattgct 28675726  T
Q  212 ttt-ttaggttggttaacatgtgct-taagggcacaagttaacatgaccc 259  Q
     || |||||||| |||||||||||  ||||||||||||||||||||||||    
T  28675725 cttattaggttgcttaacatgtgccctaagggcacaagttaacatgaccc 28675676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 27918493 - 27918380
Alignment:
Q  96 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 194  Q
    |||||||||||||||||| || ||||||||  |||| ||||| ||||| |  ||||||||  |||||||  |||||||||||| ||   ||||| |||||    
T  27918493 taacttgtgccctcaaggacacatgttaaggaactcgttatagaaatatatgtatcaaaagtcgtgcattaaacttcttaaaagttaaaatattatattt 27918394  T
Q  195 tccaatgcaaaatt 208  Q
    | ||||||||||||    
T  27918393 ttcaatgcaaaatt 27918380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 258
Target Start/End: Original strand, 14138979 - 14139144
Alignment:
Q  96 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 194  Q
    ||||||||||| |||||| || |||||||   || | ||||| ||||| || ||||||||| |||| |  ||| ||||||||| ||   ||||| |||||    
T  14138979 taacttgtgccttcaagggcacatgttaatgaaccctttatagaaatatacgtatcaaaaatcgtgtagtcaatttcttaaaagttaaaatattatattt 14139078  T
Q  195 tccaatgcaaaattactttttta-ggttggttaacatgtg--cttaagggcacaagttaacatgacc 258  Q
    |||||| || ||||||||||||| ||||  ||||||||||  ||||| | |||||||||||||||||    
T  14139079 tccaatacataattacttttttagggttccttaacatgtgcccttaa-gacacaagttaacatgacc 14139144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 259
Target Start/End: Original strand, 29508720 - 29508834
Alignment:
Q  147 tatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcac 244  Q
    ||||||||  |||| || ||||||||||||| ||   ||||| | ||||||||||||||||| || ||||| ||||  |||||||||| | | |||||||    
T  29508720 tatcaaaagtcgtgtattcaacttcttaaaagtttaaatattatgttttccaatgcaaaattgctctttttgggttccttaacatgtgcccttagggcac 29508819  T
Q  245 aagttaacatgaccc 259  Q
    ||||||||| |||||    
T  29508820 aagttaacacgaccc 29508834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 259
Target Start/End: Complemental strand, 14603101 - 14603008
Alignment:
Q  168 cttcttaaaaattgtcatattgtattttccaatgcaaaattac-ttttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 259  Q
    ||||||||||||||  ||||| |||||| |||| ||||||| | |||||||| ||| |||||||||| | |||| |||||| ||||||| ||||    
T  14603101 cttcttaaaaattgatatattatatttttcaatacaaaattgctttttttagattgtttaacatgtgccataagagcacaaattaacataaccc 14603008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 259
Target Start/End: Complemental strand, 41460565 - 41460529
Alignment:
Q  224 ttaacatgtgct-taagggcacaagttaacatgaccc 259  Q
    |||||||||||| ||||||||||||||||||||||||    
T  41460565 ttaacatgtgctctaagggcacaagttaacatgaccc 41460529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 82 - 259
Target Start/End: Original strand, 4505 - 4684
Alignment:
Q  82 ttttttgcaaataataacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaatt 180  Q
    ||||| ||||||  |||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||    
T  4505 tttttggcaaatgctaacttgtgccctcaaggacacatgttaagatactcattatagaaatatacatatcaaaatgcgtgcattcaacttcttaaaaatt 4604  T
Q  181 gtcatattgtattttccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 259  Q
    |||||||| | |||| |||||  ||||| || ||||||||||| |||| ||||| ||| | | ||||||||||||||||||    
T  4605 gtcatattat-tttttcaatgtgaaattgctctttttaggttgcttaatatgtgcctttatgacacaagttaacatgaccc 4684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 4658677 - 4658789
Alignment:
Q  96 taacttgtgccctcaaggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtatttt 195  Q
    ||||||| ||| |||||||| ||||||||||||| |||||||||||| |||||| |||| | |||||| |||||||||||||||||||||||||| ||||    
T  4658677 taacttgagccttcaaggcacatgttaagatacttattataaaaatacacatattaaaaggtgtgcattcaacttcttaaaaattgtcatattgtgtttt 4658776  T
Q  196 ccaatgcaaaatt 208  Q
    || ||| ||||||    
T  4658777 ccgatgtaaaatt 4658789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 258
Target Start/End: Complemental strand, 5799896 - 5799731
Alignment:
Q  96 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 194  Q
    |||||||||||||||||| || ||||||||  | | |||||||||||| |||||||||||   |||||| ||||||||||||  ||| ||||||   |||    
T  5799896 taacttgtgccctcaaggacatatgttaaggaagttattataaaaatatacatatcaaaagttgtgcattcaacttcttaaaggttgacatattacgttt 5799797  T
Q  195 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgacc 258  Q
    | |||||||||| | || ||||||||||| |||||||||| | ||||||||||||||| |||||||    
T  5799796 ttcaatgcaaaactgctctttttaggttgtttaacatgtgccataagggcacaagttagcatgacc 5799731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 233
Target Start/End: Original strand, 31262562 - 31262702
Alignment:
Q  96 taacttgtgccctcaagg-cagatgttaagatactcattataaaaataga-catatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtatt 193  Q
    |||||||| ||||||||| || || |||||| |||||||||| ||||| | |||||||||||  |||||| ||||||||||||| ||| |||||| | ||    
T  31262562 taacttgtaccctcaagggcatatattaagaaactcattatagaaatataacatatcaaaaattgtgcattcaacttcttaaaagttgacatattatgtt 31262661  T
Q  194 ttccaatgcaaaatt-acttttttaggttggttaacatgtg 233  Q
    |||||||||||||||   |||||||||||| ||||||||||    
T  31262662 ttccaatgcaaaattgttttttttaggttgtttaacatgtg 31262702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 259
Target Start/End: Complemental strand, 41884776 - 41884610
Alignment:
Q  96 taacttgtgccctcaa-ggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 194  Q
    |||||||||||||||| |||| ||||||||  |||||||||| ||| | |||||||||||  | |||||   ||||||||||| ||   ||||| |||||    
T  41884776 taacttgtgccctcaatggcacatgttaagtaactcattatagaaacatacatatcaaaagtcatgcatttgacttcttaaaagttaaaatattttattt 41884677  T
Q  195 tccaatgcaaaattactttt-ttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 259  Q
    ||||||||||| ||  |||| |||||||  |||||||||| ||| | ||||||||||||||| ||||    
T  41884676 tccaatgcaaagttgtttttgttaggttccttaacatgtgcctttaaggcacaagttaacattaccc 41884610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 1035572 - 1035654
Alignment:
Q  96 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaa 177  Q
    |||||||||||||||||| || ||||||||  |||||||||| ||||| |||||||||||  | ||||| |||||| ||||||    
T  1035572 taacttgtgccctcaagggcacatgttaaggaactcattatagaaatatacatatcaaaagtcttgcattcaacttattaaaa 1035654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 257
Target Start/End: Complemental strand, 8644773 - 8644680
Alignment:
Q  165 caacttcttaaaaattgtcatattgtattttccaatgcaaaattacttttttaggttggttaacatgtgct-taagggcacaagttaacatgac 257  Q
    ||||||||||||||||   || || |||||||||||||||| || ||||||| | ||  |||||||  ||| | ||||||||||||||||||||    
T  8644773 caacttcttaaaaattaaaatgttatattttccaatgcaaagttgcttttttggatttcttaacatacgctcttagggcacaagttaacatgac 8644680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 48149311 - 48149250
Alignment:
Q  127 actcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatatt 188  Q
    |||||| ||| ||||| ||||||||||| |||||||| |||||| |||||| ||||| ||||    
T  48149311 actcataatagaaatacacatatcaaaatgcgtgcattcaactttttaaaagttgtcctatt 48149250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 250
Target Start/End: Complemental strand, 20061212 - 20061055
Alignment:
Q  96 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 194  Q
    |||||||||||||||||| || ||| ||||  |||||||||| ||||| || ||||||||   |||||| ||||||||||||| ||| |||||| | |||    
T  20061212 taacttgtgccctcaagggcacatgctaaggaactcattatagaaatatacgtatcaaaagttgtgcattcaacttcttaaaagttgacatattatgttt 20061113  T
Q  195 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagtta 250  Q
    | ||||||||| || || ||||||||||| |||||||||| | |||||| ||||||||    
T  20061112 ttcaatgcaaagttgctctttttaggttgcttaacatgtgccctaagggaacaagtta 20061055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 1705047 - 1705130
Alignment:
Q  172 ttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaaca 253  Q
    |||||| |||||||||||| ||||||||| ||||||| || ||||||||||| |||||||||| | ||||||||||||||||||    
T  1705047 ttaaaagttgtcatattgtgttttccaatccaaaattgctctttttaggttgcttaacatgtgccctaagggcacaagttaaca 1705130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 259
Target Start/End: Original strand, 14275760 - 14275925
Alignment:
Q  96 taacttgtgccctcaaggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtatttt 195  Q
    ||||||||||||  | |||| || |||||  |||||||||| ||||| || ||||||||  | ||||| ||||||||||||| ||   ||||| | ||||    
T  14275760 taacttgtgccccaagggcacatattaaggaactcattatagaaatatacgtatcaaaagtcatgcattcaacttcttaaaagttaatatattatgtttt 14275859  T
Q  196 ccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 259  Q
    ||||||||||||| || ||||| ||||| |||| ||||| ||| |||| |||||||| ||||||||    
T  14275860 ccaatgcaaaattgctctttttgggttgcttaatatgtgcctttagggaacaagttagcatgaccc 14275925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 250
Target Start/End: Complemental strand, 39420350 - 39420193
Alignment:
Q  96 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 194  Q
    |||||||| | ||||||| || ||||||||  |||||||||| ||||| |||||| |||   ||||||| ||||||||| ||| ||   ||||| | |||    
T  39420350 taacttgttcgctcaagggcacatgttaaggaactcattatagaaatatacatattaaatgtcgtgcattcaacttcttgaaagttaaaatattatgttt 39420251  T
Q  195 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagtta 250  Q
    ||||||||||| || || ||||||||||  |||||||||| |||||||||||||||||    
T  39420250 tccaatgcaaagttgctctttttaggttccttaacatgtgccttaagggcacaagtta 39420193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 42184863 - 42184939
Alignment:
Q  158 gtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaacatgtg 233  Q
    |||||| |||||||| |||| |||||||||||| ||||| ||||||||||| || |||||| |||| ||||||||||    
T  42184863 gtgcattcaacttctaaaaagttgtcatattgtgttttcaaatgcaaaattgctctttttaagttgtttaacatgtg 42184939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 177
Target Start/End: Original strand, 2889110 - 2889192
Alignment:
Q  96 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaa 177  Q
    |||||||||||||||||| || |||||||   ||| |||||||||||| |||||||||||  ||| ||| |||||||||||||    
T  2889110 taacttgtgccctcaagggcacatgttaatgaacttattataaaaatacacatatcaaaattcgtacattcaacttcttaaaa 2889192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 13242226 - 13242295
Alignment:
Q  192 ttttccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 259  Q
    |||||||||||||||||||| |||||| |||  |||||||||| | |||| |||||||||||||||||||    
T  13242226 ttttccaatgcaaaattactctttttaagttctttaacatgtgccataagtgcacaagttaacatgaccc 13242295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 256
Target Start/End: Original strand, 36528403 - 36528514
Alignment:
Q  147 tatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaacatgt-gcttaagggcac 244  Q
    ||||||||  ||||||| ||||||||||||| ||| ||| || | ||||||||||||||  | || |||||| |||| |||||||||  | ||||| |||    
T  36528403 tatcaaaagtcgtgcattcaacttcttaaaagttgacatgttatgttttccaatgcaaagctgctctttttaagttgcttaacatgtaccctaaggacac 36528502  T
Q  245 aagttaacatga 256  Q
    ||||||||||||    
T  36528503 aagttaacatga 36528514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 180
Target Start/End: Original strand, 2641426 - 2641535
Alignment:
Q  72 tatatatatattttttgcaaataataacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaactt 170  Q
    ||||||||||| ||| |||||||  ||||||||||||||||| || |||||||   | |||||||||||||| || ||| ||||  ||||||  |||| |    
T  2641426 tatatatatatatttggcaaataccaacttgtgccctcaaggacacatgttaaagaaatcattataaaaatatacgtatgaaaagtcgtgcagtcaacat 2641525  T
Q  171 cttaaaaatt 180  Q
     |||||||||    
T  2641526 tttaaaaatt 2641535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 36285005 - 36285109
Alignment:
Q  131 attataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaaca 229  Q
    |||||||||||| |||||| ||||   || ||| ||||||||||||| ||   ||||| | |||| |||||||||||| || |||||| |||| ||||||    
T  36285005 attataaaaatatacatattaaaagttgtacattcaacttcttaaaagttaaaatattatttttttcaatgcaaaattgctctttttatgttgtttaaca 36285104  T
Q  230 tgtgc 234  Q
    |||||    
T  36285105 tgtgc 36285109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 259
Target Start/End: Complemental strand, 44721380 - 44721344
Alignment:
Q  224 ttaacatgtgct-taagggcacaagttaacatgaccc 259  Q
    |||||||||||| ||||||||||||||||||||||||    
T  44721380 ttaacatgtgctctaagggcacaagttaacatgaccc 44721344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 233
Target Start/End: Original strand, 31313311 - 31313450
Alignment:
Q  96 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 194  Q
    |||||||||||||||||| || ||||||||  | |||||||| ||||| || ||||||||  | ||||| |||||| |||||| ||| |||||| | |||    
T  31313311 taacttgtgccctcaagggcacatgttaaggaagtcattatagaaatatacgtatcaaaagtcatgcattcaactttttaaaagttgacatattatgttt 31313410  T
Q  195 tccaatgcaaaattact-tttttaggttggttaacatgtg 233  Q
    ||||||||||| || || ||||||| ||| ||||||||||    
T  31313411 tccaatgcaaagttgctctttttagattgcttaacatgtg 31313450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 259
Target Start/End: Complemental strand, 40505411 - 40505246
Alignment:
Q  96 taacttgtgccctcaa-ggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 194  Q
    ||||||||| |||||| || | ||||||||  ||||||||| |||||| | |||||||||  ||||||| ||||||||||||| ||   ||||  |||||    
T  40505411 taacttgtgtcctcaaaggtacatgttaaggaactcattatgaaaatatatatatcaaaagtcgtgcattcaacttcttaaaagttaaaatatcatattt 40505312  T
Q  195 tccaatgcaaaattac-ttttttaggttggttaacatgtgcttaagggcacaagttaacatgaccc 259  Q
    |  |||||||| ||||  |||| | |||  ||||||||||| |   ||||||||||||||||||||    
T  40505311 tttaatgcaaagttacacttttgaagttatttaacatgtgcctttaggcacaagttaacatgaccc 40505246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 259
Target Start/End: Original strand, 6530310 - 6530476
Alignment:
Q  96 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 194  Q
    |||||||||||||||||| || ||||||||  ||| |||| | ||||| |   || ||||  ||||||| ||||||||||||| |    ||||| | |||    
T  6530310 taacttgtgccctcaagggcacatgttaaggaacttattaaagaaatataagcataaaaagtcgtgcattcaacttcttaaaagtcaatatattatgttt 6530409  T
Q  195 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 259  Q
    ||||||||||| || || ||||| ||||| |||||||||| | | ||| ||||||||||||||||||    
T  6530410 tccaatgcaaagttgctctttttgggttgcttaacatgtgtccttaggacacaagttaacatgaccc 6530476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 5493443 - 5493362
Alignment:
Q  96 taacttgtgccctcaa-ggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaa 176  Q
    |||||||||||||||| |||| ||||||||| | |||||||| ||||| ||  |||||||  ||||||| |||||| |||||    
T  5493443 taacttgtgccctcaagggcacatgttaagaaagtcattatagaaatacacgcatcaaaagtcgtgcattcaactttttaaa 5493362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 15067673 - 15067742
Alignment:
Q  192 ttttccaatgcaaaattactt-ttttaggttggttaacatgtgc-ttaagggcacaagttaacatgaccc 259  Q
    |||||||||||||| || ||| |||||||||  ||||||||||| || | ||||||||||||||||||||    
T  15067673 ttttccaatgcaaagttgcttattttaggttccttaacatgtgcctttacggcacaagttaacatgaccc 15067742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 259
Target Start/End: Original strand, 38869903 - 38869939
Alignment:
Q  224 ttaacatgtgc-ttaagggcacaagttaacatgaccc 259  Q
    ||||||||||| |||||||||||||||||||||||||    
T  38869903 ttaacatgtgccttaagggcacaagttaacatgaccc 38869939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 10960554 - 10960637
Alignment:
Q  117 atgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaat 200  Q
    |||||||||| ||||||||| ||||| |||||| ||||| ||||||| ||||||||||| | |||| ||||||| |||||||||    
T  10960554 atgttaagatcctcattatagaaatacacatattaaaaaacgtgcattcaacttcttaatagttgttatattgtgttttccaat 10960637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 259
Target Start/End: Original strand, 154333 - 154369
Alignment:
Q  224 ttaacatgtg-cttaagggcacaagttaacatgaccc 259  Q
    |||||||||| ||||||||||||||||||||||||||    
T  154333 ttaacatgtgtcttaagggcacaagttaacatgaccc 154369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 37919184 - 37919299
Alignment:
Q  117 atgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattactttttt 216  Q
    ||||||||| |||||||||| ||||| || |||||||||  |||||| ||||||||||||| ||| |||||| | |||||||||| ||| ||  | ||||    
T  37919184 atgttaagaaactcattatataaatatacgtatcaaaaattgtgcattcaacttcttaaaagttgacatattatgttttccaatgtaaagttgttctttt 37919283  T
Q  217 aggttggttaacatgt 232  Q
    | |||| |||||||||    
T  37919284 atgttgcttaacatgt 37919299  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 48192702 - 48192590
Alignment:
Q  117 atgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattactttttt 216  Q
    ||||||||| ||| |||||| ||||| || ||| ||||| || |||| ||||||||||||| ||| |||||| | ||||| | ||||||||| |||||||    
T  48192702 atgttaagaaacttattatagaaatatacttattaaaaatcgcgcattcaacttcttaaaagttgacatattatgttttcaattgcaaaattgctttttt 48192603  T
Q  217 aggttggttaaca 229  Q
    || ||| ||||||    
T  48192602 agattgcttaaca 48192590  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 255
Target Start/End: Complemental strand, 54787922 - 54787794
Alignment:
Q  129 tcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaatta-cttttttaggttggttaa 227  Q
    |||||||||||||| |||||||||||| ||| ||| |||| |||||||| ||   || || |||||| ||||| ||| ||| ||||||||||||  |||     
T  54787922 tcattataaaaatatacatatcaaaaatcgtacattcaacatcttaaaagttaaaatgttatatttttcaatgaaaagttatcttttttaggttccttat 54787823  T
Q  228 catgtg-cttaagggcacaagttaacatg 255  Q
    |||||| ||||||| ||||||||||||||    
T  54787822 catgtgccttaaggacacaagttaacatg 54787794  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 4539875 - 4539942
Alignment:
Q  110 aaggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaa 177  Q
    |||||| ||||||||| |||||||||||||||| |  ||| ||||| ||||||  |||||||||||||    
T  4539875 aaggcacatgttaagaaactcattataaaaatatatgtattaaaaatcgtgcaatcaacttcttaaaa 4539942  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 258
Target Start/End: Original strand, 13637916 - 13638059
Alignment:
Q  117 atgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaatt-acttttt 215  Q
    ||||||||| | |||||||||||||| ||  |||||||  ||||||| ||| ||||||||||||   || || | |||||||| | ||||||   |||||    
T  13637916 atgttaagaaagtcattataaaaatatacgcatcaaaattcgtgcattcaaattcttaaaaattaaaatgttatgttttccaacgtaaaattgttttttt 13638015  T
Q  216 taggttggttaacatgtg-cttaagggcacaagttaacatgacc 258  Q
    ||||||  |||||||||| | | |||| ||||||||||||||||    
T  13638016 taggttctttaacatgtgccctcagggtacaagttaacatgacc 13638059  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 259
Target Start/End: Complemental strand, 24355484 - 24355448
Alignment:
Q  224 ttaacatgtgc-ttaagggcacaagttaacatgaccc 259  Q
    ||||||||||| |||||||||||||||||||||||||    
T  24355484 ttaacatgtgccttaagggcacaagttaacatgaccc 24355448  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 177
Target Start/End: Complemental strand, 41144752 - 41144656
Alignment:
Q  82 ttttttgcaaataataacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaa 177  Q
    |||||| |||||  || |||||| |||||||| || ||||||||  |||||||||| ||||| |||||||||||  ||||||| |||||| ||||||    
T  41144752 tttttttcaaatgttatcttgtgtcctcaagggcacatgttaaggaactcattatagaaatatacatatcaaaagtcgtgcattcaactttttaaaa 41144656  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 214277 - 214370
Alignment:
Q  168 cttcttaaaaattgtcatattgtattttccaatgcaaaattac-ttttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 259  Q
    ||||||||||||||  ||||| |||||| |||| ||||||| | |||||||| ||| |||||||||| | |||| |||||| ||||||| ||||    
T  214277 cttcttaaaaattgatatattatatttttcaatacaaaattgctttttttagattgtttaacatgtgccataagagcacaaattaacataaccc 214370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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