View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14708_high_1 (Length: 586)
Name: NF14708_high_1
Description: NF14708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14708_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Complemental strand, 53505365 - 53504796
Alignment:
| Q |
1 |
ctcttagaccatgcaaagacatgcgttctaagcgggaagctttatgtttattatcctgaagatacaagaaatgttggtgttatttttaaccacgtctatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53505365 |
ctcttagaccatgcaaagacatgcgttctaagcgggaagctttatgtttattatcctgaagatacaagaaatgttggtgttatttttaaccacgtctatg |
53505266 |
T |
|
| Q |
101 |
agctgcgtggccttataacaggagagcaattcttttctgctgattctcttagcgataatcagaaggttagtctgcatcctgcattttttccattgaaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53505265 |
agctgcgtggccttataacaggagagcaattcttttctgctgattctcttagcgataatcagaaggttagtctgcatcctgcattttttccattgaaagt |
53505166 |
T |
|
| Q |
201 |
cgagcatgtgtttatgttactggcatgctccaattaatataattgatataccaatgttcagagtttgtagtttcctttgaagctctctattaggaatagg |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53505165 |
cgagcatgtgtttatgttgctggcatgctccaattaatataattgatataccaatgttcagagtttgtagtttcctttgaagctctctattaggaatagg |
53505066 |
T |
|
| Q |
301 |
gtaagcttgtgacacctttaannnnnnngggaaagtccaggtgtatgtcgattcattggtgaaaaaggcatacgacaattgggagcaggttgtagagtac |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53505065 |
gtaagcttgtgacacctttaatttttttgggaaagtccaggtgtatgtcgattcattggtgaaaaaggcatacgacaattgggagcaggttgtagagtac |
53504966 |
T |
|
| Q |
401 |
gatggtaaatcacttgtggatgctgagcaaaataacaacactgttgaatctgaaaatgaacttcatgtggagtcaattgattatgatggtggtttagatc |
500 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53504965 |
gatggcaaatcacttgtggatgctgagcaaaataacaacactgttgaatctgaaaatgaacttcatgtggagtcaattgattatgatggtggtttagatc |
53504866 |
T |
|
| Q |
501 |
atcaactgctaatgccatccctccccatgtctgttgcttctgaacagcagattaattcagcgatgccagt |
570 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53504865 |
atcaactgctaatgccatccctccccatgtctgttgcttctgaacagcagattaattcagcgatgccagt |
53504796 |
T |
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