View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14708_high_3 (Length: 454)
Name: NF14708_high_3
Description: NF14708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14708_high_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 41784459 - 41784023
Alignment:
| Q |
18 |
aagaaaacaccggtcccacttcttgaaccggacccaccaagaaaaaccgcctgcatcattcctccaccaccggtctgcactggagaaagccttggtagac |
117 |
Q |
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| T |
41784459 |
aagaaaacaccggtcccatttcttgaaccggacccaccaagaaaaaccgcctgcatcattcctccaccaccggtctgcactgaagcaagccttggtagac |
41784360 |
T |
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| Q |
118 |
gagtacagttcccaccattaccttccttctgaatctctttttctttggcctcattttgcttcggagacagagcatgttgcttgatgtcactgatgtaatg |
217 |
Q |
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| T |
41784359 |
gagtacagttcccaccattaccttgcttctgaatctctttttctttggcctcattttgcttcggagacagagcatgttgcttgatgtcactgatgtaatg |
41784260 |
T |
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| Q |
218 |
ttttttccttaattcaatggctttaatttgttcctcaatcaatgctttgtgtgaggaaaatctatcaacgttgcaggacttgaaactttgaatatcagaa |
317 |
Q |
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| T |
41784259 |
ttttttccttaattcaatggctttaatttgttcctcaatcaatgctttgtgtgatgaaaatctatcaacgttgcaggacttgaaactttgaatatcagaa |
41784160 |
T |
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| Q |
318 |
ccatgaatattctgtttagaagtccctgtttctttaagcttcatagtattattctgaatccctttaaccacattagcgtaggtttttgtcttccaacaag |
417 |
Q |
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| T |
41784159 |
ccatgaatattctgtttagaagtccctgtttctttacgcttcatagtattattctgaatccctttaaccacattagcgtaggtttttgtcttccaacaag |
41784060 |
T |
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| Q |
418 |
gtgtagctggtggagatgaatccagagatgacccttc |
454 |
Q |
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| T |
41784059 |
gtgtagctggtggagatgaatccagagatgacccttc |
41784023 |
T |
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