View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14708_high_4 (Length: 345)
Name: NF14708_high_4
Description: NF14708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14708_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 26216806 - 26217147
Alignment:
| Q |
1 |
aaaagttgtttccacacttttacaacatagggaacacgttgaaggaatattgcattagcctccaaactaacaaagattaaaataagttgaaacatacatg |
100 |
Q |
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| T |
26216806 |
aaaatttgtttccacacttttacaacatagggaacacgttgaaggaatattgcattagcctccaaactaacaaagattaaaataagttgaaacatacatg |
26216905 |
T |
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| Q |
101 |
tattgatgtatatatatgtatagaaatatcagctgtttgatcataaggacttttgatgctgtgcaagaaattaattaaccaaattaaaaaacacaagtcc |
200 |
Q |
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| T |
26216906 |
tattgatgtatatatatgtatagaaatatcagctgtttgatcataaggacttttgatgctgtgcaagaaattaatgaaccaaatttaaaaacacaagtcc |
26217005 |
T |
|
| Q |
201 |
ctaacttacatataaacacaatgcaagcaatccaatgtcaaaattttaagccaatagttcctagtaaattcatgcagaagctgt----ttcaaaatgaaa |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26217006 |
ctaacttacatataaacacaatgcaagcaatccaatgtcaaaattttaagccaatagttcctagtaaattcatgcagaagctgtttcattcaaaatgaaa |
26217105 |
T |
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| Q |
297 |
atcagaaaagttgaacttcaataatgctttgtagtatctgtg |
338 |
Q |
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| T |
26217106 |
atcagaaaagttgaacttctataatgctttgtagtatctgtg |
26217147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 179 - 338
Target Start/End: Complemental strand, 18212582 - 18212423
Alignment:
| Q |
179 |
ccaaattaaaaaacacaagtccctaacttacatataaacacaatgcaagcaatccaatgtcaaaattttaagccaatagttcctagtaaattcatgcaga |
278 |
Q |
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| T |
18212582 |
ccaaatttaaaaacacaagtccctaacttacatataaacacaatgcaagcaatccaatgtcaaaattttaagtcaatagttcctagtaaattcatgcaga |
18212483 |
T |
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| Q |
279 |
agctgtttcaaaatgaaaatcagaaaagttgaacttcaataatgctttgtagtatctgtg |
338 |
Q |
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| T |
18212482 |
agctgtttcaaaatgaaaatcagaaaagttgaacttctataatgctttgtagtatctgtg |
18212423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 28847150 - 28847097
Alignment:
| Q |
121 |
tagaaatatcagctgtttgatcataaggacttttgatgctgtgcaagaaattaat |
175 |
Q |
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| T |
28847150 |
tagaaatatcagctgtttgatcataaggac-tatgatgctgtgcaagaaattaat |
28847097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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