View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14708_low_9 (Length: 229)
Name: NF14708_low_9
Description: NF14708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14708_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 26480397 - 26480325
Alignment:
| Q |
138 |
acgcacaatatattagtatatattttagtgccaaccaattgttctgcaattgatagaaattaatatcactgcctatg |
214 |
Q |
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| T |
26480397 |
acgcacaatatattagtat----tttagtgccaaccaattgttcagcaattgatagaaattaatatcactgcctatg |
26480325 |
T |
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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 26480518 - 26480477
Alignment:
| Q |
17 |
agtaccaatccatacaacctgtataaacaaataatgttcttg |
58 |
Q |
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| T |
26480518 |
agtaccaatccatacaacctgtacaaacaaataatgttcttg |
26480477 |
T |
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