View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14709_high_13 (Length: 246)
Name: NF14709_high_13
Description: NF14709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14709_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 53395480 - 53395707
Alignment:
| Q |
13 |
cgaaaattacatgcacaaacagctattatgatataatacgataagatgctagttgatagtaataatattgaacattttgaattaggnnnnnnnnnaaata |
112 |
Q |
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| T |
53395480 |
cgaaaattacatgcacaaacagttattatgatataatacgataagatgctagttgatagtaataatattgaacattttgaattaggtttttttttaaata |
53395579 |
T |
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| Q |
113 |
aaaaatctccaaattctcaaaattaatcacgtgagcgtggtttcaaaaataatattgaacttccttcaaaatatatatattgaactaaccaaaccaaggc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53395580 |
aaaaatctccaaattctcaaaattaatcacgtgagcgtggtttcaaaaataatattgaacttccttcaaaatatatatattgaactaaccaaaccaaggc |
53395679 |
T |
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| Q |
213 |
cataaaaacttgatattgatgattttct |
240 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
53395680 |
cataaaaacttgatattgatgattttct |
53395707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 53438182 - 53438407
Alignment:
| Q |
13 |
cgaaaattacatgcacaaacagctattatgatataatacgataagatgctagttgatagtaataatattgaacattttgaattaggnnnnnnnnnaaata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53438182 |
cgaaaattacatgcacaaacagctattatgatataatacgataagatgctagttgatagtaataatattgaacattttgaattaggtttttttttaaata |
53438281 |
T |
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| Q |
113 |
aaaaatctccaaattctcaaaattaatcacgtgagcgtggtttcaaaaataatattgaacttccttcaaaatatatatattgaactaaccaaaccaaggc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53438282 |
aaaaatctccaaattctcaaaattaatcacgtgagcgtagtttcaaaaataatattgaacttccttcaaaatatatatattgaactaaccaaaccaaggc |
53438381 |
T |
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| Q |
213 |
cataaaaacttgatattgatgatttt |
238 |
Q |
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|||||||||||||||||||||||||| |
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| T |
53438382 |
cataaaaacttgatattgatgatttt |
53438407 |
T |
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