View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14709_high_14 (Length: 240)
Name: NF14709_high_14
Description: NF14709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14709_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 53395467 - 53395247
Alignment:
| Q |
1 |
attataatgtgtcaagatattgaatcatgttttaagagtttaaaattttcnnnnnnngaagaagagttaaatatgtttttaatatttaaaaattatcaat |
100 |
Q |
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| T |
53395467 |
attataatgtgtcaagatattgaatcatgttttaagagtttaaaattttcaaaaaaagaagaagagttaaatatgtttttaatatttaaaaattaacaat |
53395368 |
T |
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| Q |
101 |
tgttttttatcgttagaatttcttttgtcggcttttagttccaaaaatgtttttcatcaatactttggtcatcatattccccagtttcggttgtaattgg |
200 |
Q |
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| T |
53395367 |
tgtttttgatcgttagaatttcttttgtcggcttttagttccaaaaatgtttttcatcaatactttggtcatcatattccccaatttcggttgtaattgg |
53395268 |
T |
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| Q |
201 |
tttcaactttcatgactttcc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
53395267 |
tttcaactttcatgactttcc |
53395247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 53438170 - 53437954
Alignment:
| Q |
1 |
attataatgtgtcaagatattgaatcatgttttaagagtttaaaattttcnnnnnnngaagaagagttaaatatgtttttaatatttaaaaattatcaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53438170 |
attataatgtgtcaagatattgaatcatgttttaagagtttaaaatttttaaaaaaagaagaagagttaaatatgtttttaatatttaaaaattaacaat |
53438071 |
T |
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| Q |
101 |
tgttttttatcgttagaatttcttttgtcggcttttagttccaaaaatgtttttcatcaatactttggtcatcatattccccagtttcggttgtaattgg |
200 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
53438070 |
tgtttttgatcgttagaatttcttttgtcggcttttggttccaaaaatgtttttcatcaatactttggtcatcatattccccaatttcggttgtaattgg |
53437971 |
T |
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| Q |
201 |
tttcaactttcatgact |
217 |
Q |
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||||||||||||||||| |
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| T |
53437970 |
tttcaactttcatgact |
53437954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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