View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14709_high_2 (Length: 712)
Name: NF14709_high_2
Description: NF14709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14709_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 21 - 697
Target Start/End: Original strand, 43981495 - 43982170
Alignment:
| Q |
21 |
ccaggatcaagggggcccacaagcccgacatcacctcttcatccaaggttgaatgttttgagtcttgactcacctacaagcaggcaagaagatggaagga |
120 |
Q |
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| T |
43981495 |
ccaggatcaagggggcccacaagcccgacatcacctcttcatccaaggttgaatgttttgagtcttgactcacctacaagcaggcaagaagatggaagga |
43981594 |
T |
|
| Q |
121 |
gtgagtgtcatccattgcctcttccgccaggctcaccgactagttcttcttctcttcccaacaacacaagaccaaatggaccgatagaaagcagtaccac |
220 |
Q |
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| T |
43981595 |
gtgagtgtcatccattgcctcttccgccaggctcaccgactagttcttcttctcttcctaacaacacaagaccaaatggactgatagaaagcagtaccac |
43981694 |
T |
|
| Q |
221 |
taaccgtggcagttggaagagaggaaagcttctaggtcggggaacttttggacatgtttacttgggattcaataggtattggttgnnnnnnnnnnnnctt |
320 |
Q |
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| T |
43981695 |
taaccgtggcagttggaagagaggaaagcttctaggtcggggaacttttggacatgtttacttgggattcaataggtattggttgttttttatttt-ctt |
43981793 |
T |
|
| Q |
321 |
ctatggcaatgtatatttactttcaatatttcgggtcagcacccaacaaattttattgtgtatagtcatttcctgaatatttaaggnnnnnnnttgtgtt |
420 |
Q |
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| T |
43981794 |
ctatggcaatgtatatttactttcaatatttcgggtcagcacccaacaaattttattgtgcatagtcatttcctgaatatttaaggaaaaaaattgtgtt |
43981893 |
T |
|
| Q |
421 |
ttcttcagtctggttgttgtaatgtttaggctaataaattaatattacaatgccgatcgttgttagcaaaaacaaaactctgactttaaagcaacagctg |
520 |
Q |
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| T |
43981894 |
ttcttcagtctggttgttgtaatgtttaggctaataaattaatattacaatgccgattgttgttagcaaaaacaaaactctgactttaaagcaacggctg |
43981993 |
T |
|
| Q |
521 |
tttttacagattgcgtattctgtctgattttgtccatattacagacagattactgaaactatatgtattctgcttcctatgtttgtactacatctaaaat |
620 |
Q |
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| T |
43981994 |
tttttacagattgcgtattctgtctgattttgtccatattacagacagattactgaaactatatgtattctgcttcctatgtttgtactacatctaaaat |
43982093 |
T |
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| Q |
621 |
gcttgtattgcgaatttgcaactttggtagtgaaagtggacaattgtgtgcaataaaagaagtcagggctgtctgtg |
697 |
Q |
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| T |
43982094 |
gcttgtattgcgaatttgcaactttggtagtgaaagtggacaattgtgtgcaataaaagaagtcagggctgtctgtg |
43982170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 42 - 172
Target Start/End: Original strand, 39213747 - 39213877
Alignment:
| Q |
42 |
agcccgacatcacctcttcatccaaggttgaatgttttgagtcttgactcacctacaagcaggcaagaagatggaaggagtgagtgtcatccattgcctc |
141 |
Q |
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||||| |||||||||||||||||||||||| | | ||||| |||||| |||||||| | | |||||| || ||||||||| | ||||| |||||||||| |
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| T |
39213747 |
agccctacatcacctcttcatccaaggttgcagggtttgaatcttgattcacctacgggaaagcaagacgacggaaggagtcaatgtcacccattgcctc |
39213846 |
T |
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| Q |
142 |
ttccgccaggctcaccgactagttcttcttc |
172 |
Q |
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| T |
39213847 |
ttccaccaggatctccaactagtccttcttc |
39213877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 648 - 697
Target Start/End: Original strand, 39214305 - 39214354
Alignment:
| Q |
648 |
tagtgaaagtggacaattgtgtgcaataaaagaagtcagggctgtctgtg |
697 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||| || ||||| |
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| T |
39214305 |
tagtgaaaatggacaaatgtgtgcaataaaagaagtcagggttggctgtg |
39214354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 39213933 - 39213997
Alignment:
| Q |
234 |
tggaagagaggaaagcttctaggtcggggaacttttggacatgtttacttgggattcaataggta |
298 |
Q |
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||||||| |||||||||||| || |||||||| ||||| |||||||| | |||||||||||||| |
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| T |
39213933 |
tggaagaaaggaaagcttcttggccggggaacatttgggcatgtttatcttggattcaataggta |
39213997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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