View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14709_high_3 (Length: 583)
Name: NF14709_high_3
Description: NF14709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14709_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 61 - 570
Target Start/End: Complemental strand, 48275053 - 48274537
Alignment:
| Q |
61 |
gtgctagctgcatatatttataggcatagaaattacagacagaatttgaatacgtggcaattgcaatctttatccataatggaccacacttcattcattc |
160 |
Q |
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| T |
48275053 |
gtgctagctgcatatatttataggcatagaaattacagacagaatttggatacgtggcaattgcaatctttatccataatggaccacacttcattcat-- |
48274956 |
T |
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| Q |
161 |
atatgaacaaaggtatttccaactccaacaaaattaatgtttgtggagaataggattccatttaggataaacttgtgcatttgaaacttt-gacgtacgt |
259 |
Q |
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| T |
48274955 |
--atgaacaaaggtatttccaactccaacaaaattaatgtttgtggagaatgggattccatttaggataaacttgtgcatttgaaacttttgacgtacgt |
48274858 |
T |
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| Q |
260 |
aatatgcattgcaacaacttatatgt----------gactctaccatggtatagtattannnnnnnngtatatttaaattggagaactggacccattata |
349 |
Q |
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| T |
48274857 |
aatatgcattgcaacaacttatatgtcgttaaaggtgactctaccatggtatagtattattttttttgtatatttaaattggagaactggacccattata |
48274758 |
T |
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| Q |
350 |
accccagtaatacttttaattaagtttgattaggctctatacagttcaaaattagtttgtgaaatgcaaggacaattattggtgtatcttcnnnnnnnat |
449 |
Q |
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| T |
48274757 |
accccagtaatacttataattaagtttgattaggctctatacagttcaaaattagtttgtgaaatgcaaggacaattattggtgtatcttctttttttat |
48274658 |
T |
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| Q |
450 |
aatcacagaatctgtattctgtgtcccttcaatgcattaggaagacatattaatgaggttggggcattttatcagaaacaatgtactgtttcaaaaagaa |
549 |
Q |
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| T |
48274657 |
aatcacagaatctgtattctgtgtcccttcaatgcattaggaagacatattaatgaggttggggcattttatcagaaacaatgtactgtttcaaaaagaa |
48274558 |
T |
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| Q |
550 |
aatcagaaagaatgttaatat |
570 |
Q |
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| T |
48274557 |
aatcagaaagaatgttaatat |
48274537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 48275119 - 48275079
Alignment:
| Q |
1 |
ataatatatgacaaagttcaagtggaccgtgagctatgatg |
41 |
Q |
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| T |
48275119 |
ataatatatgccaaagttcaagtggaccgtgagctatgatg |
48275079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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