View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14709_high_7 (Length: 291)
Name: NF14709_high_7
Description: NF14709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14709_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 49686094 - 49686352
Alignment:
| Q |
17 |
cagagaatttagcaaaaagtgagtttcaatttcaaaacaaataaatgatagaaaatcattgtagtccgtgatagacacaaattcacatgacttgtgtagt |
116 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686094 |
cagagaatttagcaaaaattgggtttcaatttcaaaacaaataaatgatagaaaatcattgtagtccgtgatagacacaaattcacatgacttgtgtagt |
49686193 |
T |
|
| Q |
117 |
aattttccaagtcaactatagcgtgtcaattggcttcaaaggatatatttatgttgtgcaaattaacaagtgtggaacaaattgtgaaacagaataggat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49686194 |
aattttccaagtcaactatagcgtgtcaattggcttcaaaggatatatttatgttgtgcaaattaacaagtgtggaacaaattgtgaaacagaataggat |
49686293 |
T |
|
| Q |
217 |
ggctctagttcatgcactacatcttttgttctctcatttgactgtgttaccgctacttg |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49686294 |
ggctctagttcatgcactacatcttttgttctctcatttgactgtgttactgctacttg |
49686352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 93 - 275
Target Start/End: Original strand, 49690421 - 49690612
Alignment:
| Q |
93 |
acaaattcacatgacttgtgtagta---attttccaagtcaactatagcgtgtcaattggcttcaaaggatatatttatgttgtgcaaattaacaagtgt |
189 |
Q |
| |
|
||||||| ||| ||||||||| ||| ||||||||||||||||| ||||||||||| ||||||||| |||||||||||| ||||||||||| |||||| |
|
|
| T |
49690421 |
acaaatttacaagacttgtgtggtactcattttccaagtcaacta--gcgtgtcaatttgcttcaaagaatatatttatgtcgtgcaaattaa-aagtgt |
49690517 |
T |
|
| Q |
190 |
ggaacaaattgtgaaacagaataggatggctctagttcatgcactacat---------cttttgttctctcatttgactgtgttaccgctacttg |
275 |
Q |
| |
|
|||||||||||| |||| ||| | |||||| ||||| ||| ||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49690518 |
ggaacaaattgtttaacacaattgaatggctttagtttatgttttacattttaggttccttttgttctctcatttgactgtgttactgctacttg |
49690612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 49690330 - 49690378
Alignment:
| Q |
15 |
agcagagaatttagcaaaaagtgagtttcaatttcaaaacaaataaatg |
63 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| ||||||||| |
|
|
| T |
49690330 |
agcagagaatttagcaagaagtggatttcaatttcaaaagaaataaatg |
49690378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University