View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14709_low_1 (Length: 975)
Name: NF14709_low_1
Description: NF14709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14709_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-166; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 413 - 758
Target Start/End: Original strand, 2701190 - 2701530
Alignment:
| Q |
413 |
ataattattattcctttacgccaacttatattatttgaaaataccttgaactctagccatgatagatttagggttaggcatgttttgcacagaaattgga |
512 |
Q |
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| T |
2701190 |
ataattattattcttttacgccaacttat--tatttgaaaataccttgaactctagcaatgatagatttagggttaggcatgttttgcatagaaattgga |
2701287 |
T |
|
| Q |
513 |
aacaaaaaatgggattgaattgaaccgtaccaataattctttcttagtataatttacatagtttcttacatattttgaattaagatatattttgaatgag |
612 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2701288 |
aacaaaaaatgggattgaattgaaccgtaccaataattctttcttagtataatttacatagtttcttacatattttgaattaagatatattttgaatgac |
2701387 |
T |
|
| Q |
613 |
aagcatttatataatttacaataattatattacaaaatccatcttcagtctgcacaacaattgtatttaccaaattctacagtcaaatcttaacctttct |
712 |
Q |
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| T |
2701388 |
aagcatttgtataatttacaata---atattacaaaatccatcttcagtctccacaacaattgtatttaccaaattctacagtcaaatcttaacctttct |
2701484 |
T |
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| Q |
713 |
aaaatttagatctccaaacaaaatttgttggattttaggaaaccaa |
758 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2701485 |
aaaatttagatctccaaacaaaatttgttggattttaggaaaccaa |
2701530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 766 - 958
Target Start/End: Original strand, 2701574 - 2701766
Alignment:
| Q |
766 |
gtcatttttctaatgaccatataacatgactaaaaacatatatcatctttaattattagcagccttgtacattcttcattaacattgaaagtgaggtaaa |
865 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2701574 |
gtcatttttctaatgaccatataacatgactaaacacatatatcatctttaattattagcagccttttacattcttcattaacattgaaagtgaggtaaa |
2701673 |
T |
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| Q |
866 |
attttcatcttcttctcctttgttcaccccctgcaataataagatgaaacattaccttaaattactaatttcaaaaaacttcaagaaagtcct |
958 |
Q |
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| T |
2701674 |
attttcatcttcttctcctttgttcaccccctgcaataataagatgaaacattaccttaaaatactaatttcaaaaaaattcaagaaagtcct |
2701766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 805 - 919
Target Start/End: Original strand, 2700495 - 2700609
Alignment:
| Q |
805 |
atatcatctttaattattagcagccttgtacattcttcattaacattgaaagtgaggtaaaattttcatcttcttctcctttgttcaccccctgcaataa |
904 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2700495 |
atatcatctttaattattagcagccttgtacattcttcattaacattgaaagtgaggtaaaattttcatcttcttctcctttgctcaccccctgcaataa |
2700594 |
T |
|
| Q |
905 |
taagatgaaacatta |
919 |
Q |
| |
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||| ||||||||||| |
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| T |
2700595 |
taacatgaaacatta |
2700609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 277 - 425
Target Start/End: Original strand, 2701026 - 2701174
Alignment:
| Q |
277 |
attttaaccaataatcttgtgaaatcaatgaatttcctttttgataaatttatgtgttacaggtggcacatttcttggccaaatgtttaaaactttgcta |
376 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
2701026 |
attttaaccaataatcttgtgaaatcaatgaat--cctttttgataaatttatgtcttacgtgtggcacatttcttggccaaatatttaaaactttgcta |
2701123 |
T |
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| Q |
377 |
ttattaa--nnnnnnnnnataccgactttgctattattataattattattc |
425 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2701124 |
ttattaatttttttttttataccgactttgctattattataattattattc |
2701174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 652 - 806
Target Start/End: Original strand, 2700282 - 2700437
Alignment:
| Q |
652 |
catcttcagtctgcacaacaattgtatttaccaaattctacagtcaaatcttaacctttctaaaatttagatctccaaacaaaatttgttggattttagg |
751 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||| | || ||||||| ||||||||| |
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| T |
2700282 |
catcttcagtctccacaacaattgtatttaccaaattttacggtcaaatcttaagctttctaaaatttagatctccagaaaatatttgttagattttagg |
2700381 |
T |
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| Q |
752 |
aaaccaa-nnnnnnngtcatttttctaatgaccatataacatgactaaaaacatat |
806 |
Q |
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||||||| |||||||||||| |||||||||||||| ||| || |||||| |
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| T |
2700382 |
aaaccaattaattttgtcatttttctagtgaccatataacataactgaacacatat |
2700437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 575 - 649
Target Start/End: Original strand, 2698994 - 2699068
Alignment:
| Q |
575 |
ttcttacatattttgaattaagatatattttgaatgagaagcatttatataatttacaataattatattacaaaa |
649 |
Q |
| |
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|||||| |||||||||||||||| |||||||| |||| |||||||| |||||||||||||| |||||||| |||| |
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| T |
2698994 |
ttcttatatattttgaattaagacatattttgcatgacaagcatttgtataatttacaatagttatattagaaaa |
2699068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 2698816 - 2698852
Alignment:
| Q |
346 |
atttcttggccaaatgtttaaaactttgctattatta |
382 |
Q |
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||||||||||||||||||||||||||| ||||||||| |
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| T |
2698816 |
atttcttggccaaatgtttaaaactttcctattatta |
2698852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 441 - 520
Target Start/End: Original strand, 2698878 - 2698956
Alignment:
| Q |
441 |
tattatttgaaaataccttgaactctagccatgatagatttagggttaggcatgttttgcacagaaattggaaacaaaaa |
520 |
Q |
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||||| ||||||||| ||| |||||||| ||| ||| ||||| || |||||||||||||| |||||||||||| ||||| |
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| T |
2698878 |
tattacttgaaaataggttgcactctagcaatgttag-tttagagtcaggcatgttttgcatagaaattggaaagaaaaa |
2698956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 912 - 953
Target Start/End: Original strand, 2700730 - 2700771
Alignment:
| Q |
912 |
aaacattaccttaaattactaatttcaaaaaacttcaagaaa |
953 |
Q |
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||||||||||||| | ||| |||||||||||||||||||||| |
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| T |
2700730 |
aaacattaccttagaataccaatttcaaaaaacttcaagaaa |
2700771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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