View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14709_low_11 (Length: 271)
Name: NF14709_low_11
Description: NF14709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14709_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 714286 - 714538
Alignment:
| Q |
19 |
aagtgaggtttccagtttgtgactccacatgtctattaacttagtacaataaaacaatacttcttaattagaacaaagagagttgtattatagaattcat |
118 |
Q |
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| T |
714286 |
aagtgaggtttccagtttgtgactccacatgtctattaacttagtacaataaaacaatacttcttaattagaacaaagagagttgtattatagaattcat |
714385 |
T |
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| Q |
119 |
gctatattctttgttcattatcaatgcaataaaattcaagttacaattattaatctgtttgaatgtataattgtatatggataataatgtattttatcac |
218 |
Q |
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| T |
714386 |
gctatattctttgttcattatcaatgcaataaaattcaagttacaattattaatctgtttgaatgtataattgtatatggataataatgtattttatcac |
714485 |
T |
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| Q |
219 |
agaaaccatcaagcgaataaaataataagtcgtaataaaacaactataaaggg |
271 |
Q |
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| T |
714486 |
agaaaccatcaagcgaataaaataataagtcgtaataaaacaactataaaggg |
714538 |
T |
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Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 148 - 267
Target Start/End: Original strand, 3765086 - 3765205
Alignment:
| Q |
148 |
taaaattcaagttacaattattaatctgtttgaatgtataattgtatatggataataatgtattttatcacagaaaccatcaagcgaataaaataataag |
247 |
Q |
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| T |
3765086 |
taaagttcaagttacaattattaatctgtttgaatgaataattgtatatgaataataatgtattttatcacataaaccatcaagcgaataaaataataag |
3765185 |
T |
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| Q |
248 |
tcgtaataaaacaactataa |
267 |
Q |
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| T |
3765186 |
tcgtaataaaacagctataa |
3765205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 810477 - 810566
Alignment:
| Q |
64 |
acaataaaacaatacttcttaattagaacaaagagagttgtattatagaattcatgctatattctttgttcat-tatcaatgcaataaaa |
152 |
Q |
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| T |
810477 |
acaataaaacaatacttcctaattagaacaaagagagttgtattatagaattcatgctatattctttgttcatctatcaatgcaataaaa |
810566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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