View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14709_low_3 (Length: 583)

Name: NF14709_low_3
Description: NF14709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14709_low_3
NF14709_low_3
[»] chr1 (2 HSPs)
chr1 (61-570)||(48274537-48275053)
chr1 (1-41)||(48275079-48275119)


Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 61 - 570
Target Start/End: Complemental strand, 48275053 - 48274537
Alignment:
Q  61 gtgctagctgcatatatttataggcatagaaattacagacagaatttgaatacgtggcaattgcaatctttatccataatggaccacacttcattcattc 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||      
T  48275053 gtgctagctgcatatatttataggcatagaaattacagacagaatttggatacgtggcaattgcaatctttatccataatggaccacacttcattcat-- 48274956  T
Q  161 atatgaacaaaggtatttccaactccaacaaaattaatgtttgtggagaataggattccatttaggataaacttgtgcatttgaaacttt-gacgtacgt 259  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  48274955 --atgaacaaaggtatttccaactccaacaaaattaatgtttgtggagaatgggattccatttaggataaacttgtgcatttgaaacttttgacgtacgt 48274858  T
Q  260 aatatgcattgcaacaacttatatgt----------gactctaccatggtatagtattannnnnnnngtatatttaaattggagaactggacccattata 349  Q
    ||||||||||||||||||||||||||          |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  48274857 aatatgcattgcaacaacttatatgtcgttaaaggtgactctaccatggtatagtattattttttttgtatatttaaattggagaactggacccattata 48274758  T
Q  350 accccagtaatacttttaattaagtttgattaggctctatacagttcaaaattagtttgtgaaatgcaaggacaattattggtgtatcttcnnnnnnnat 449  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  48274757 accccagtaatacttataattaagtttgattaggctctatacagttcaaaattagtttgtgaaatgcaaggacaattattggtgtatcttctttttttat 48274658  T
Q  450 aatcacagaatctgtattctgtgtcccttcaatgcattaggaagacatattaatgaggttggggcattttatcagaaacaatgtactgtttcaaaaagaa 549  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48274657 aatcacagaatctgtattctgtgtcccttcaatgcattaggaagacatattaatgaggttggggcattttatcagaaacaatgtactgtttcaaaaagaa 48274558  T
Q  550 aatcagaaagaatgttaatat 570  Q
    |||||||||||||||||||||    
T  48274557 aatcagaaagaatgttaatat 48274537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 48275119 - 48275079
Alignment:
Q  1 ataatatatgacaaagttcaagtggaccgtgagctatgatg 41  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  48275119 ataatatatgccaaagttcaagtggaccgtgagctatgatg 48275079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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