View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14709_low_4 (Length: 521)
Name: NF14709_low_4
Description: NF14709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14709_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 116 - 513
Target Start/End: Complemental strand, 14035478 - 14035076
Alignment:
| Q |
116 |
cttctgaaacacttattttgttatcgcgtagtctttaccttttttctattagtctggacccatttatgttttgagtcatgaccgttcaattcttttgggt |
215 |
Q |
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| T |
14035478 |
cttctaaaacacttattttgtcatcgcgtagtctttaccttttttttattagtctggacccatttatgttttgagtcatgaccgttcaattcttttgagt |
14035379 |
T |
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| Q |
216 |
tgtttccaggatagttgtggatgctgattgcttcgaagaaatgaaaatgaaccaatggattttgtgagagaatatcataaaatattgaaccaaactcaat |
315 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14035378 |
tgtttcctggatagttgtggatgttgattgcttcgaagaaatgaaaatgaactaatggattttgtgagagaatatcataaaata-tgaaccaaactcaat |
14035280 |
T |
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| Q |
316 |
aaaggcaacatgtatgttctattttannnnnnnctaagaaattatattcaccttc------nnnnnnnnnngaataaatccaccttctttggaaaggcga |
409 |
Q |
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| T |
14035279 |
aaaggcaacatgtatgttctatttt-cttttttctaagaaattatattcaccttcttttttctttttttttgaataaatccaccttctttggaaaggcga |
14035181 |
T |
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| Q |
410 |
atataatttcccctaaata-nnnnnnnnaaagataatttcccctaaatataatgatttggtttcgatttggtgcaagttaaataacttctatcttttgat |
508 |
Q |
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| T |
14035180 |
atataatttcccgtaaatattttttttgaaagataatttcccctaaatataatgatttggtttcgatttggtgcaagttaaataacttctatcttttgat |
14035081 |
T |
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| Q |
509 |
gatgt |
513 |
Q |
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||||| |
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| T |
14035080 |
gatgt |
14035076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 14037243 - 14037147
Alignment:
| Q |
116 |
cttctgaaacacttattttgttatcgcgtagtctttaccttttttctattagtctggacccatttatgttttgagtcatgaccgttcaattcttttgg |
213 |
Q |
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||||||||| ||||| |||||||||||||| || |||| |||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14037243 |
cttctgaaaaacttactttgttatcgcgtaatcgttacttttttt-tattagtttggacccatttatgttttgagtcatgatcgttcaattcttttgg |
14037147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 222 - 340
Target Start/End: Complemental strand, 14036600 - 14036490
Alignment:
| Q |
222 |
caggatagttgtggatgctgattgcttcgaagaaatgaaaatgaaccaatggattttgtgagagaatatcataaaatattgaaccaaactcaataaaggc |
321 |
Q |
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||||||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| || |||| ||||||||||| |
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| T |
14036600 |
caggataattgtggatgttgattgctttgaagaaatgaaaatgaa--------ttttgtgagaggatatcataaaatatataatcaaaatcaataaaggc |
14036509 |
T |
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| Q |
322 |
aacatgtatgttctatttt |
340 |
Q |
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||||||||||||||||||| |
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| T |
14036508 |
aacatgtatgttctatttt |
14036490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 14035575 - 14035522
Alignment:
| Q |
18 |
aaagtagtctttccatagtaggtgtaattgactagagacttttccaagtctatc |
71 |
Q |
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| T |
14035575 |
aaagtagtctttccatagtaggtgtaattgactagagacttttccaagtctatc |
14035522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 116 - 224
Target Start/End: Complemental strand, 14036860 - 14036752
Alignment:
| Q |
116 |
cttctgaaacacttattttgttatcgcgtagtctttaccttt--tttctattagtctggacccatttatgttttgagtcatgaccgttcaattcttttgg |
213 |
Q |
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||||| ||||||||| ||||| ||| |||||||||||| ||| ||| |||||||||||||||||||||||| |||||| |||| |||||||| ||||| |
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| T |
14036860 |
cttctaaaacacttactttgtcatctcgtagtctttacttttattttttattagtctggacccatttatgtt--gagtcacgaccattcaattcatttgg |
14036763 |
T |
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| Q |
214 |
gttgtttccag |
224 |
Q |
| |
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||||||||||| |
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| T |
14036762 |
gttgtttccag |
14036752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 477
Target Start/End: Complemental strand, 14036450 - 14036414
Alignment:
| Q |
441 |
ataatttcccctaaatataatgatttggtttcgattt |
477 |
Q |
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|||||||||||||||||||||| | |||||||||||| |
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| T |
14036450 |
ataatttcccctaaatataatggtgtggtttcgattt |
14036414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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