View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14709_low_5 (Length: 506)
Name: NF14709_low_5
Description: NF14709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14709_low_5 |
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| [»] scaffold0743 (1 HSPs) |
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Alignment Details
Target: scaffold0743 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: scaffold0743
Description:
Target: scaffold0743; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 3929 - 3744
Alignment:
| Q |
1 |
aagacgatgaactgttggaggagagataaaatcttgaaagtgcttaaccgaaaagaccgtagagaaatggagggaggtgctacctataacaacactccaa |
100 |
Q |
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| T |
3929 |
aagacgacgaactgttggaggagagataaaatcttgaaagtgtttaaccgaa--gaccgtggagaaatggagggaggtgctacctataacaacactccaa |
3832 |
T |
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| Q |
101 |
cgctcaagtcagtatgtaaatagaagggaggctcgggttagaagagagataccttgtgaggtgttgatgttagctttatataggccaa |
188 |
Q |
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| T |
3831 |
cactcaagtcagtatgtaaatagaagggaggctcgggttagaagagagataccttgtgaggtcttgctgttagctttatataggccaa |
3744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 386 - 490
Target Start/End: Complemental strand, 30381066 - 30380962
Alignment:
| Q |
386 |
ttgttatcgtttgattcctagaatcatctccttcttttattgctccgattttgtttcatttttattctaatttttctctgatcgtacaaaaggttgtgag |
485 |
Q |
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| T |
30381066 |
ttgttatcatttgattccaagaatcatcttcttctttgattgctccaattgtgtttcatttgtgttctaatttttctctgatcgtacaaaaggttgcgag |
30380967 |
T |
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| Q |
486 |
aagtt |
490 |
Q |
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| T |
30380966 |
aagtt |
30380962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 10006482 - 10006533
Alignment:
| Q |
138 |
ttagaagagagataccttgtgaggtgttgatgttagctttatataggccaag |
189 |
Q |
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| T |
10006482 |
ttagaaaagagataccttgtgaggtcttggtgttcgccttatataggccaag |
10006533 |
T |
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