View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14709_low_6 (Length: 432)
Name: NF14709_low_6
Description: NF14709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14709_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 8e-65; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 52 - 221
Target Start/End: Original strand, 15260006 - 15260174
Alignment:
| Q |
52 |
gtttgtcgagaaatttaattagaattaaagatgaaaaacatgtaaatgttacctaccgctgaggaaattcatgaaagtaatacttacaagagataatatt |
151 |
Q |
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| T |
15260006 |
gtttgtcgaggaatttaattagaattaaagatgagaaacatgtaaatgttacctatcgccgagggaattcatgaaagtaatacttacaagagataatatt |
15260105 |
T |
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| Q |
152 |
tgggtgatattgcgatgttaatgcgagttgcattggtcaaccaccagtgtgtaaggtgtcaccatttatt |
221 |
Q |
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| T |
15260106 |
tgggtgatattgtggtgttaatgcgagttgcattgatcaaaca-cagtgtgtaaggtgtcaccatttatt |
15260174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 274 - 353
Target Start/End: Original strand, 15260227 - 15260306
Alignment:
| Q |
274 |
ccacttattatattgtggttgaccaatgatgtcttgaccaatgttactcaaatgttgtttgttcaacatattttctcgtt |
353 |
Q |
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| T |
15260227 |
ccacttattatattgtggttgaccaatgatgtcttgaccaatgttactcaaatgttgtttgttcaacatattttctcgtt |
15260306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 345 - 411
Target Start/End: Original strand, 15260489 - 15260556
Alignment:
| Q |
345 |
tttctcgttatggctacttatagttgttgtataagtaatgttt-tcccggttgaattaccacatgcca |
411 |
Q |
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| T |
15260489 |
tttctcgttatggctacttatagttgttgtataagtaatgtttatcccggttgaattaccacatgcca |
15260556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 15272889 - 15272990
Alignment:
| Q |
52 |
gtttgtcgagaaatttaattagaattaaagatg-aaaaacatgtaaatgttacctaccgctgaggaaattcatgaaagtaatacttacaagagataatat |
150 |
Q |
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| T |
15272889 |
gtttgtcgagatatttaattagaattaaagatgaaaaaacttgtaaatgttacctatggc-gagggaattcatgaaagtaatgcttataaggggtaatat |
15272987 |
T |
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| Q |
151 |
ttg |
153 |
Q |
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| T |
15272988 |
ttg |
15272990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 352 - 411
Target Start/End: Original strand, 15273239 - 15273299
Alignment:
| Q |
352 |
ttatggctacttatagttgttgtataagtaatgttt-tcccggttgaattaccacatgcca |
411 |
Q |
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| T |
15273239 |
ttatggctacttatagttgttgtataagtcatgtttatcccagtttaattaccacatgcca |
15273299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 15244946 - 15245052
Alignment:
| Q |
52 |
gtttgtcgagaaatttaattagaattaaagatg-aaaaacatgtaaatgttacctaccgctgaggaaattcatgaaagtaatacttacaagagataatat |
150 |
Q |
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| T |
15244946 |
gtttgttgagaagtttaattagaattaaagatgaaaaaacacgtaaatgttgcttacgatccaggaaattcatgaaagtaatgcttatgagggataacat |
15245045 |
T |
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| Q |
151 |
ttgggtg |
157 |
Q |
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||||||| |
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| T |
15245046 |
ttgggtg |
15245052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 15245282 - 15245349
Alignment:
| Q |
354 |
atggctacttatagttgttgtataagtaatgt-tttcccggttgaattaccacatgccatattcttgg |
420 |
Q |
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| T |
15245282 |
atggatacttatagttgttgtataagtaatgtctatcccggtttaattgctacatgccactttcttgg |
15245349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 15252363 - 15252433
Alignment:
| Q |
85 |
aaaaacatgtaaatgttacctaccgctgaggaaattcatgaaagtaatacttacaagagataatatttggg |
155 |
Q |
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| T |
15252363 |
aaaaacatgtaaatggtgcctacgaccgagggaattcattaaagtaatgcttacaagagacaacatttggg |
15252433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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