View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14709_low_7 (Length: 336)

Name: NF14709_low_7
Description: NF14709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14709_low_7
NF14709_low_7
[»] chr3 (3 HSPs)
chr3 (16-101)||(11351289-11351374)
chr3 (168-223)||(11351173-11351228)
chr3 (297-336)||(11351059-11351098)
[»] chr2 (2 HSPs)
chr2 (168-223)||(42638324-42638379)
chr2 (43-101)||(42638195-42638253)
[»] chr1 (1 HSPs)
chr1 (32-86)||(2878030-2878083)
[»] chr6 (1 HSPs)
chr6 (53-86)||(5746984-5747017)
[»] chr5 (1 HSPs)
chr5 (55-91)||(34345833-34345869)


Alignment Details
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 11351374 - 11351289
Alignment:
Q  16 caagatgaacagagactgatcatccaaaaattactagacaaaggcgtcgtatataggcggaacaactaaaagaaaaccccaaatag 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||    
T  11351374 caagatgaacagagactgatcatccaaaaattactagacaaaggcgtcgtatataggcggaacgactaaaaaaaaaacccaaatag 11351289  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 11351228 - 11351173
Alignment:
Q  168 tcaccgcctaaattaaaacccagttgcaaaacaaccactgaaaaaacaaagtccat 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11351228 tcaccgcctaaattaaaacccagttgcaaaacaaccactgaaaaaacaaagtccat 11351173  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 336
Target Start/End: Complemental strand, 11351098 - 11351059
Alignment:
Q  297 tgtagcacatatatatagattaaaagtgtatttggtgtct 336  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11351098 tgtagcacatatatatagattaaaagtgtatttggtgtct 11351059  T

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Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 42638324 - 42638379
Alignment:
Q  168 tcaccgcctaaattaaaacccagttgcaaaacaaccactgaaaaaacaaagtccat 223  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42638324 tcaccgcgtaaattaaaacccagttgcaaaacaaccactgaaaaaacaaagtccat 42638379  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 42638195 - 42638253
Alignment:
Q  43 aaattactagacaaaggcgtcgtatataggcggaacaactaaaagaaaaccccaaatag 101  Q
    ||||||| ||||||||| | |||||||||||||||||  |||||||||||  |||||||    
T  42638195 aaattacaagacaaaggtgccgtatataggcggaacacttaaaagaaaacttcaaatag 42638253  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 2878083 - 2878030
Alignment:
Q  32 tgatcatccaaaaattactagacaaaggcgtcgtatataggcggaacaactaaaa 86  Q
    ||||||||||||||||| || | |||||||| |||||||||||||||| ||||||    
T  2878083 tgatcatccaaaaatta-taaataaaggcgttgtatataggcggaacatctaaaa 2878030  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 5747017 - 5746984
Alignment:
Q  53 acaaaggcgtcgtatataggcggaacaactaaaa 86  Q
    ||||||||||||||||||||||||||| ||||||    
T  5747017 acaaaggcgtcgtatataggcggaacacctaaaa 5746984  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 34345833 - 34345869
Alignment:
Q  55 aaaggcgtcgtatataggcggaacaactaaaagaaaa 91  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  34345833 aaaggcgtcgtatataggcggaacacctaaaggaaaa 34345869  T

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