View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470_high_11 (Length: 244)
Name: NF1470_high_11
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 8594467 - 8594251
Alignment:
| Q |
1 |
attttatctactgcttgttagaatcataagatgatatgttccaccttcgatagtggatttggaagctgacgacatcgctactggtgatggtgagattgaa |
100 |
Q |
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| T |
8594467 |
attttatctacttctggttagaatcataagatgcaatgttccaccttcgatagtggatttggaagctgacgacatcgctactagtgatggtgagat---- |
8594372 |
T |
|
| Q |
101 |
tttagggaatttggggtttgaatttgggagaaaaatgaatattgatgtttaaattggattattggatttgttgagnnnnnnnnnnnnnctgggttaattg |
200 |
Q |
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| T |
8594371 |
------gaatttggg----gaatttgggagaaaaatgaatattgatgtttaaattggattattggatttgttgagttttttaatttttctgggttaattg |
8594282 |
T |
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| Q |
201 |
atgaaggttaatgaaaatgatgaattttctg |
231 |
Q |
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| T |
8594281 |
atgaaggttaatgaaaatgatgaattttctg |
8594251 |
T |
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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 21325467 - 21325522
Alignment:
| Q |
120 |
gaatttgggagaaaaatgaatattgatgtttaaattggattattggatttgttgag |
175 |
Q |
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| T |
21325467 |
gaatttgggagaaaattgaaaattgatgtttaaattggattattggttttgttgag |
21325522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 9450033 - 9449972
Alignment:
| Q |
113 |
ggggtttgaatttgggagaaaaatgaatattgatgtttaaattggattattggatttgttgag |
175 |
Q |
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| T |
9450033 |
ggggtttgaatttggg-gaaaattgaatgttgatgtttaaattagatcattgggtttcttgag |
9449972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 14160174 - 14160235
Alignment:
| Q |
113 |
ggggtttgaatttgggagaaaaatgaatattgatgtttaaattggattattggatttgttgag |
175 |
Q |
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| T |
14160174 |
ggggtttgaatttggg-gaaaattgaatattgatgtttaaattagattattgggtttcttgag |
14160235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 34127150 - 34127090
Alignment:
| Q |
114 |
gggtttgaatttgggagaaaaatgaatattgatgtttaaattggattattggatttgttga |
174 |
Q |
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|||| |||||||||| |||| |||||| ||||||||||||||||||||||| |||||||| |
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| T |
34127150 |
gggtatgaatttggggaaaaattgaataatgatgtttaaattggattattgggtttgttga |
34127090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 1858948 - 1859006
Alignment:
| Q |
117 |
tttgaatttgggagaaaaatgaatattgatgtttaaattggattattggatttgttgag |
175 |
Q |
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| T |
1858948 |
tttgaattttggagaaaatcgaacattgaagtttaaattggattattgcatttgttgag |
1859006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 17690034 - 17689973
Alignment:
| Q |
113 |
ggggtttgaatttgggagaaaaatgaatattgatgtttaaattggattattggatttgttgag |
175 |
Q |
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||||||||||||||||| |||| ||||||||||| |||||||| ||||||||| ||| ||||| |
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| T |
17690034 |
ggggtttgaatttggga-aaaattgaatattgatttttaaattagattattgggtttcttgag |
17689973 |
T |
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