View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1470_high_12 (Length: 238)
Name: NF1470_high_12
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470_high_12 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 35833713 - 35833493
Alignment:
| Q |
18 |
catggtgctgcaactgtatgtagacagcatttttccccatttcaatctcaatatatacatatttttctttcaacttgctaaaattgtctgctcttatttg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35833713 |
catggtgctgcaactgtatgtagacagcatttttccccatttcaatctcaatacatacatatttttctttcaacttgctaaaattgtctgctcttatttg |
35833614 |
T |
|
| Q |
118 |
aaggttcaagcttggaaaagccgcttctcatggctatgaggagaattactggggcaatcttcctagtgagtagagaatcttgattcatttgtggtatgtg |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35833613 |
aaggttcaagcttggaaaggccgcttctcatggctatgaggagaattactggggcaatcttcctagtgagtagagaatcttgattcatttgtggtatgtg |
35833514 |
T |
|
| Q |
218 |
acagactgaaatatatgcttt |
238 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
35833513 |
gcagactgaaatatatgcttt |
35833493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University