View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470_high_14 (Length: 234)
Name: NF1470_high_14
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470_high_14 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 53 - 234
Target Start/End: Complemental strand, 43169347 - 43169166
Alignment:
| Q |
53 |
tcattcggtcacctgtattcaatatttatgtcatgaatggttacaaaaaccaccccgcagcttgtatataatttacaactatatttgtaattgaattaag |
152 |
Q |
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| T |
43169347 |
tcattcggtcacctgtattcaatatttatgtcatgaatggttacaaaaaccaccctgcaacttgtatataattttcaactatatttgtaattgaattaag |
43169248 |
T |
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| Q |
153 |
ttaaccaaagttcttagtgtcatatctacatcaattcagttcaaatgnnnnnnncagaagcacagatagatttgggggtgtc |
234 |
Q |
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| T |
43169247 |
ttaaccaaagttcttagtgtcatatctacatcaattcagttcaaatgaaaaaaacagaagcacagatagatttgggggtgtc |
43169166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 43169506 - 43169344
Alignment:
| Q |
13 |
gaagaaccattgcagtcggttcacctatcttcattagatttcattcggtcacctgtattcaatatttatgtcatgaatggttacaaaaaccaccccgcag |
112 |
Q |
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| T |
43169506 |
gaagaaccattgcagtcagttcacctatcttcattagattccattcggtcacctgtattcaatatttatgtcatgaatggttacaaaaaccaccctgcaa |
43169407 |
T |
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| Q |
113 |
cttgtatataatttacaactatatttgtaattgaattaagttaaccaaagttcttagtgtcat |
175 |
Q |
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| T |
43169406 |
cttgtatataatttacaactatatttgtaattgaattaagttaaccaaagttcttagtgtcat |
43169344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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