View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1470_high_15 (Length: 233)

Name: NF1470_high_15
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1470_high_15
NF1470_high_15
[»] chr6 (4 HSPs)
chr6 (130-220)||(6994872-6994962)
chr6 (1-52)||(6994743-6994794)
chr6 (130-219)||(10362292-10362381)
chr6 (130-218)||(34434424-34434512)
[»] chr7 (5 HSPs)
chr7 (130-218)||(25019208-25019296)
chr7 (134-216)||(41805653-41805735)
chr7 (130-218)||(30573234-30573322)
chr7 (1-48)||(41805507-41805554)
chr7 (2-48)||(25019082-25019128)
[»] chr2 (7 HSPs)
chr2 (130-220)||(43310417-43310507)
chr2 (130-218)||(10688722-10688810)
chr2 (130-220)||(26146373-26146463)
chr2 (1-52)||(43310584-43310635)
chr2 (1-51)||(26146541-26146591)
chr2 (1-51)||(10688887-10688937)
chr2 (146-218)||(43724050-43724122)
[»] chr3 (7 HSPs)
chr3 (130-220)||(7163658-7163748)
chr3 (130-218)||(48929887-48929975)
chr3 (1-51)||(52250888-52250938)
chr3 (1-50)||(7163827-7163876)
chr3 (130-191)||(19548276-19548337)
chr3 (130-162)||(6825037-6825069)
chr3 (134-162)||(16672781-16672809)
[»] scaffold0016 (2 HSPs)
scaffold0016 (130-220)||(27940-28030)
scaffold0016 (1-52)||(28107-28158)
[»] chr8 (7 HSPs)
chr8 (134-218)||(12332015-12332099)
chr8 (130-209)||(5802048-5802127)
chr8 (1-51)||(35029548-35029598)
chr8 (130-199)||(30426830-30426899)
chr8 (1-52)||(12332180-12332231)
chr8 (130-219)||(35029381-35029470)
chr8 (135-219)||(36492540-36492624)
[»] scaffold0061 (2 HSPs)
scaffold0061 (130-219)||(64531-64620)
scaffold0061 (1-51)||(64403-64453)
[»] scaffold0017 (2 HSPs)
scaffold0017 (130-219)||(134012-134101)
scaffold0017 (1-51)||(134179-134229)
[»] scaffold0003 (1 HSPs)
scaffold0003 (130-218)||(367165-367253)
[»] chr1 (2 HSPs)
chr1 (130-218)||(45270401-45270489)
chr1 (130-205)||(36686012-36686087)
[»] chr5 (2 HSPs)
chr5 (138-220)||(21077282-21077364)
chr5 (138-219)||(26412887-26412968)
[»] chr4 (2 HSPs)
chr4 (137-199)||(30821636-30821698)
chr4 (130-172)||(38295953-38295995)


Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 130 - 220
Target Start/End: Original strand, 6994872 - 6994962
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagttc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  6994872 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttggagatgacacctggatcattatgcaggttatacagttc 6994962  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6994743 - 6994794
Alignment:
Q  1 tttttgatcttgcggttgataaatcttgtacggttgcatacatgttttctgc 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6994743 tttttgatcttgcggttgataaatcttgtacggttgcatacatgttttctgc 6994794  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 10362381 - 10362292
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagtt 219  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||| |  || |||||||| ||||| |||| ||||||||||| ||||    
T  10362381 tgtatcattttacttcgtagtgtttctttgcagtttaatgtgacagatacatggagatggcagctggaccattctgcaggttatatagtt 10362292  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 34434512 - 34434424
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagt 218  Q
    |||||||||||||||||| |||||||||||||||||| ||| ||||| |  || ||||||    ||||||||| |||||||||||||||    
T  34434512 tgtattattttacttcgtcatgtttctttgcagtttagtgtcaaagatacatggagatgggcgttggatcattctgcaggttatacagt 34434424  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 25019208 - 25019296
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagt 218  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||| ||| |||||||| ||||||| ||||||||||||||||||    
T  25019208 tgtattattttacttggtaatgtttctttgcagtgtaatgtgaaagacacttggagatggcatctggatctttatgcaggttatacagt 25019296  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 216
Target Start/End: Original strand, 41805653 - 41805735
Alignment:
Q  134 ttattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttataca 216  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||| ||| |||||||| ||||||| |  |||||||||||||    
T  41805653 ttattttacttggtaatgtttctttgcagtgcaatgtgaaagacacttggagatggcatctggatcctattgcaggttataca 41805735  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 30573234 - 30573322
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagt 218  Q
    ||||||||||||||| |||||||||  |||||||  | ||||||||||| ||| ||||||||  |||||| |  |||||||||||||||    
T  30573234 tgtattattttacttagtaatgttttcttgcagtgcactgtgaaagacacttggagatggcatatggatcctattgcaggttatacagt 30573322  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 41805507 - 41805554
Alignment:
Q  1 tttttgatcttgcggttgataaatcttgtacggttgcatacatgtttt 48  Q
    ||||||| ||||||||||||||||| |||||||||||  |||||||||    
T  41805507 tttttgaccttgcggttgataaatcgtgtacggttgctgacatgtttt 41805554  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 25019082 - 25019128
Alignment:
Q  2 ttttgatcttgcggttgataaatcttgtacggttgcatacatgtttt 48  Q
    |||||| ||||| |||||||||||||||||||||||  |||||||||    
T  25019082 ttttgaccttgcagttgataaatcttgtacggttgctgacatgtttt 25019128  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 43310507 - 43310417
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagttc 220  Q
    ||||||||||||||| |||||||||||||||||| |||||| ||||||| ||| |||||||| ||||||| ||||||||||||||||||||    
T  43310507 tgtattattttacttggtaatgtttctttgcagtgtaatgtaaaagacacttggagatggcatctggatccttatgcaggttatacagttc 43310417  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 10688810 - 10688722
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagt 218  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||| ||| || ||||| ||||||| ||||||||||||||||||    
T  10688810 tgtattattttacttggtaatgtttctttgcagtgtaatgtgaaagacacttggaggtggcatctggatccttatgcaggttatacagt 10688722  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 26146463 - 26146373
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagttc 220  Q
    ||||||||||||||| || ||||||||||||||  |||||| ||||||| ||| |||||||| ||||||| ||||||||||||||||||||    
T  26146463 tgtattattttacttggtcatgtttctttgcagagtaatgtaaaagacacttggagatggcatctggatccttatgcaggttatacagttc 26146373  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 43310635 - 43310584
Alignment:
Q  1 tttttgatcttgcggttgataaatcttgtacggttgcatacatgttttctgc 52  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  43310635 tttttgatcttgcggttgataaatcttgtacggttgcttccatgttttctgc 43310584  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 26146591 - 26146541
Alignment:
Q  1 tttttgatcttgcggttgataaatcttgtacggttgcatacatgttttctg 51  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  26146591 tttttgatcttgcggttgataaatcttgtacggttgcttccatgttttctg 26146541  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10688937 - 10688887
Alignment:
Q  1 tttttgatcttgcggttgataaatcttgtacggttgcatacatgttttctg 51  Q
    ||||||| |||||||||||||||||||||||||||||  ||||||||||||    
T  10688937 tttttgaccttgcggttgataaatcttgtacggttgctgacatgttttctg 10688887  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 43724050 - 43724122
Alignment:
Q  146 gtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagt 218  Q
    ||||||||||||||||||||||||||||||| |  || ||||||   || ||||||| |||||||||||||||    
T  43724050 gtaatgtttctttgcagtttaatgtgaaagatacatggagatgggcgctagatcattctgcaggttatacagt 43724122  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 7163748 - 7163658
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagttc 220  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| | ||| ||||||   |||||||||| |||||||||||||||||    
T  7163748 tgtattattttacttcgtaatgtttctttgtagtttaatgtgaaagatacttggagatggttgctggatcattctgcaggttatacagttc 7163658  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 48929975 - 48929887
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagt 218  Q
    |||||||||||||||||| ||||||||||||||| ||||| |||||| |  || ||||||   |||||||||| |||||||||||||||    
T  48929975 tgtattattttacttcgtcatgtttctttgcagtctaatgagaaagatacatggagatgggcgctggatcattctgcaggttatacagt 48929887  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 52250888 - 52250938
Alignment:
Q  1 tttttgatcttgcggttgataaatcttgtacggttgcatacatgttttctg 51  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  52250888 tttttgatcttgcggttgataaatcttgcacggttgcttacatgttttctg 52250938  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 7163876 - 7163827
Alignment:
Q  1 tttttgatcttgcggttgataaatcttgtacggttgcatacatgttttct 50  Q
    |||||||||||||||||||||||||| |||||||||| | ||||| ||||    
T  7163876 tttttgatcttgcggttgataaatctagtacggttgcgtccatgtattct 7163827  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 19548276 - 19548337
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggca 191  Q
    |||||||||||| |  || ||||||||||||||| |||||||||||||| ||| | ||||||    
T  19548276 tgtattattttagtgggtgatgtttctttgcagtgtaatgtgaaagacacttggatatggca 19548337  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 6825069 - 6825037
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcag 162  Q
    |||| ||||||||||||||||||||||||||||    
T  6825069 tgtactattttacttcgtaatgtttctttgcag 6825037  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 162
Target Start/End: Original strand, 16672781 - 16672809
Alignment:
Q  134 ttattttacttcgtaatgtttctttgcag 162  Q
    |||||||||||||||||||||||||||||    
T  16672781 ttattttacttcgtaatgtttctttgcag 16672809  T

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Target: scaffold0016 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 28030 - 27940
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagttc 220  Q
    ||||||||||||||| || ||||||||||||||  |||||| ||||||| ||| |||||||| ||||||| ||||||||||||||||||||    
T  28030 tgtattattttacttggtcatgtttctttgcagagtaatgtaaaagacacttggagatggcatctggatccttatgcaggttatacagttc 27940  T

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Target: scaffold0016; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 28158 - 28107
Alignment:
Q  1 tttttgatcttgcggttgataaatcttgtacggttgcatacatgttttctgc 52  Q
    ||||| ||||||||||||||||||||||||||||||| | ||||||||||||    
T  28158 ttttttatcttgcggttgataaatcttgtacggttgcttccatgttttctgc 28107  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 12332099 - 12332015
Alignment:
Q  134 ttattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagt 218  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||| |||||||||||| ||||||| |  |||||||||||||||    
T  12332099 ttattttacttggtaatgtttctttgcagtgcaatgtgaaagacacttgtagatggcatctggatcctattgcaggttatacagt 12332015  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 5802048 - 5802127
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcagg 209  Q
    ||||||||||||||| ||||| |||||||| ||| |||||||||||||| ||  |||||||| ||||||| |||||||||    
T  5802048 tgtattattttacttggtaatatttctttgtagtgtaatgtgaaagacactttgagatggcatctggatccttatgcagg 5802127  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35029598 - 35029548
Alignment:
Q  1 tttttgatcttgcggttgataaatcttgtacggttgcatacatgttttctg 51  Q
    |||| ||||||||||||||||||||||| ||||||||  ||||||||||||    
T  35029598 ttttcgatcttgcggttgataaatcttgcacggttgctcacatgttttctg 35029548  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 30426899 - 30426830
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatc 199  Q
    ||||||||||||||| || ||||||||||||||  |||||| ||||||| ||| ||||| || |||||||    
T  30426899 tgtattattttacttggtcatgtttctttgcagagtaatgtaaaagacacttggagatgacatctggatc 30426830  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12332231 - 12332180
Alignment:
Q  1 tttttgatcttgcggttgataaatcttgtacggttgcatacatgttttctgc 52  Q
    ||||||||||||||||||||||||| |||||||| ||   ||||||||||||    
T  12332231 tttttgatcttgcggttgataaatcgtgtacggtggccgccatgttttctgc 12332180  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 35029470 - 35029381
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagtt 219  Q
    |||||||||||||||  ||||||||||||| ||| |||||| || ||||  || ||||||||   ||||| |  ||||||||||||||||    
T  35029470 tgtattattttacttgctaatgtttctttgtagtgtaatgttaaggacacctggagatggcattgggatcctattgcaggttatacagtt 35029381  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 36492624 - 36492540
Alignment:
Q  135 tattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagtt 219  Q
    |||||||||||||||||||||||||||| ||  ||| | ||| | ||| ||||||   |||||||| |  |||||||||||||||    
T  36492624 tattttacttcgtaatgtttctttgcagattggtgttagagatacttggagatggttgctggatcactcggcaggttatacagtt 36492540  T

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Target: scaffold0061 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 64531 - 64620
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagtt 219  Q
    ||||||||||||||| |||||||||||||||||| |||||| ||||||| ||| ||||| || ||||||| |  ||||||||||||||||    
T  64531 tgtattattttacttggtaatgtttctttgcagtgtaatgttaaagacacttggagatgacatctggatcctattgcaggttatacagtt 64620  T

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Target: scaffold0061; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 64403 - 64453
Alignment:
Q  1 tttttgatcttgcggttgataaatcttgtacggttgcatacatgttttctg 51  Q
    |||||||||||||||||||||||||||| | |||||| |||||||||||||    
T  64403 tttttgatcttgcggttgataaatcttgcatggttgcttacatgttttctg 64453  T

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Target: scaffold0017 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 134101 - 134012
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagtt 219  Q
    ||||||||||||||| |||||||||||||||||| |||||| ||||||| ||| ||||| || ||||||| |  ||||||||||||||||    
T  134101 tgtattattttacttggtaatgtttctttgcagtgtaatgttaaagacacttggagatgacatctggatcctattgcaggttatacagtt 134012  T

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Target: scaffold0017; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 134229 - 134179
Alignment:
Q  1 tttttgatcttgcggttgataaatcttgtacggttgcatacatgttttctg 51  Q
    |||||||||||||||||||||||||||| | |||||| |||||||||||||    
T  134229 tttttgatcttgcggttgataaatcttgcatggttgcttacatgttttctg 134179  T

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Target: scaffold0003 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 367253 - 367165
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagt 218  Q
    ||||||||||||||| |||||||||||||| |||  ||||||||||||| ||| |||||||| ||||||| |  |||||||||||||||    
T  367253 tgtattattttacttggtaatgtttctttgtagtgcaatgtgaaagacacttggagatggcatctggatcctattgcaggttatacagt 367165  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 45270489 - 45270401
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagt 218  Q
    |||||||||||||||||| ||||||||||||||| ||||| |||||| |  || ||||||   |||||||||| |||||||||||||||    
T  45270489 tgtattattttacttcgtcatgtttctttgcagtctaatgagaaagatacatggagatgggcactggatcattctgcaggttatacagt 45270401  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 36686087 - 36686012
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatg 205  Q
    ||||||||||||||| || ||||||||||||||  |||||| ||||||| ||| ||||| || ||||||| |||||    
T  36686087 tgtattattttacttggtcatgtttctttgcagagtaatgtaaaagacacttggagatgtcatctggatccttatg 36686012  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 21077364 - 21077282
Alignment:
Q  138 tttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagttc 220  Q
    ||||||||||| ||||||||||||| ||| ||||||||| | ||| |||||||  ||||| || | |||||||||||||||||    
T  21077364 tttacttcgtagtgtttctttgcagattattgtgaaagatacttggagatggctgctggagcactttgcaggttatacagttc 21077282  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 219
Target Start/End: Original strand, 26412887 - 26412968
Alignment:
Q  138 tttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatcattatgcaggttatacagtt 219  Q
    ||||||| ||| | ||||||||||||||||||||| ||| | ||| |||||||| ||||| | ||  | |||||||||||||    
T  26412887 tttactttgtagtctttctttgcagtttaatgtgacagatacttggagatggcagctggacccttccgtaggttatacagtt 26412968  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 30821636 - 30821698
Alignment:
Q  137 ttttacttcgtaatgtttctttgcagtttaatgtgaaagacatttgtagatggcacctggatc 199  Q
    |||||||| ||||||||||||||||||  ||||| ||||||| ||| |||||||| |||||||    
T  30821636 ttttactttgtaatgtttctttgcagtgcaatgtaaaagacacttggagatggcatctggatc 30821698  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 38295995 - 38295953
Alignment:
Q  130 tgtattattttacttcgtaatgtttctttgcagtttaatgtga 172  Q
    ||||| ||||||||||||||||||||||||||| |||||||||    
T  38295995 tgtatcattttacttcgtaatgtttctttgcagcttaatgtga 38295953  T

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