View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470_high_3 (Length: 382)
Name: NF1470_high_3
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 22 - 373
Target Start/End: Original strand, 42305304 - 42305655
Alignment:
| Q |
22 |
taagacggagattcaaccaatttagcctccttcattttataaagattacaatctgggaattaaaattgcaagtccacgagttcgttgaaatccttcaaca |
121 |
Q |
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| T |
42305304 |
taagacggagaatcaaccaatttagcctccttcattttataaagattacaatctgggaattaaaattgcaagtccacgagttcgttgaaatccttcaaca |
42305403 |
T |
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| Q |
122 |
aaattaacaaaaaactatgaacatgtggatgtgatagaaacagcattagttggtaagatttgcattcaatgttgtcttattgataatagcacattacaaa |
221 |
Q |
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| T |
42305404 |
aaattaacaaaaaactatgaacatgtcgatgtggtagaagcagcattagtcggtaagatttgcattcaatgttgtcttattgataatagcacattacaaa |
42305503 |
T |
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| Q |
222 |
tatgtgataaataatttactattcgaagtccaaattaattatatataaattagaaggaatgnnnnnnnaagctttctagctgttcatcatatgaataatg |
321 |
Q |
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| T |
42305504 |
tatgtgataaataatttactattcgaagtccatattaattatatataaattagaaggaatgtttttttgagctttctagctgttcatcatatgaataatg |
42305603 |
T |
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| Q |
322 |
aacacctttgaaatatacattatgagacaggaataccattgaacagaataat |
373 |
Q |
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| T |
42305604 |
aacacctttgaaatatacattatgagacaggaataccattgaacagaataat |
42305655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 32356468 - 32356527
Alignment:
| Q |
87 |
ttgcaagtccacgagttcgttgaaatccttcaacaaaattaacaaaaaactatgaacatg |
146 |
Q |
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| T |
32356468 |
ttgcaagaccacaactttgttgaaatccttcaataaaataaacaaaaaactatgaacatg |
32356527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 33581175 - 33581259
Alignment:
| Q |
102 |
ttcgttgaaatccttcaacaaaattaacaaaaaactatgaacatgtggatgtgatagaaacagcattagttggtaagatttgcattcaatg |
192 |
Q |
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| T |
33581175 |
ttcgttgaaatccttcaacaaaataaacaaaaaactaagaatatgtag------tagaagcagcattagctagtaagatttgcatgcaatg |
33581259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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