View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470_high_4 (Length: 367)
Name: NF1470_high_4
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 39033921 - 39034254
Alignment:
| Q |
18 |
gagaaggtgatattagtagaattaagggttgagctcaataatgtagataaatttgttgatgatgatttcattggatgcaatagttcagctgagtactcaa |
117 |
Q |
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| T |
39033921 |
gagaaggtgatattagtagaattaagggttgagctcaataatgtagataaatttgttgatgatgatttcattggatgcaatagttcagctgagtactcaa |
39034020 |
T |
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| Q |
118 |
tttctgattgcaattgtgacacaatatttgctgagtgcaaattcacacttttctcaatatgtgtgaccatgagataccagcatggtgtcaatgaagcaag |
217 |
Q |
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| T |
39034021 |
tttctgattgcaattgtgacacaatatttgctgagtgcaaattcacacttttctcaatatgtgtgaccatgagataccagcatggtgtcaaagaagcaag |
39034120 |
T |
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| Q |
218 |
gacaattagtgcaccatatgcctacaataacacaacaaataatatcgtaaatttatgtgtagctatgtatacttctagttgaagacatcaataacaaatc |
317 |
Q |
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| T |
39034121 |
gacaattaatgcaccatatgcctacaataacacaacaaataatatcgtaaatttatgtgtagctatgtatacttctagttgaagacatcaataacaaatc |
39034220 |
T |
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| Q |
318 |
tcaattgtttcttaatctttgttacaaatcaaat |
351 |
Q |
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| T |
39034221 |
tcaattgtttcttaatctttgttacaaatcaaat |
39034254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 244
Target Start/End: Original strand, 40899380 - 40899594
Alignment:
| Q |
30 |
ttagtagaattaagggttgagctcaataatgtagataaatttgttgatgatgatttcattggatgcaatagttcagctgagtactcaatttctgattgca |
129 |
Q |
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| T |
40899380 |
ttagtagaatcaagtcttgaactcaacaatcttgctaaatttgtcgatgatgatttcatcgggtgcaacagttcagctgagtacttaatttctgattgga |
40899479 |
T |
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| Q |
130 |
attgtgacacaatatttgctgagtgcaaattcacacttttctcaatatgtgtgaccatgagataccagcatggtgtcaatgaagcaaggacaattagtgc |
229 |
Q |
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| T |
40899480 |
gttgggttacaatattttctgagctcaaattcgcttgtttctcgatatgtgttaccatgacataccaacatggtgtcaatgagataagagttatcagtgc |
40899579 |
T |
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| Q |
230 |
accatatgcctacaa |
244 |
Q |
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| T |
40899580 |
accatatgcctacaa |
40899594 |
T |
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