View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470_high_9 (Length: 248)
Name: NF1470_high_9
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 35833387 - 35833146
Alignment:
| Q |
1 |
tcagtccaataaccttgcagctgcaccttatagcggtggacctactatacaaatcagtgttattccaatttcaataagtagtggatctttcccggctgtg |
100 |
Q |
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| T |
35833387 |
tcagtccaataaccttgcagctgcaccttatagcggtggacctactatacagatcagtgttattccaatttcaataagtagtggatctttcccggctgtg |
35833288 |
T |
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| Q |
101 |
ccagatgccaataagaaacaaaatcaatcttctgcaccactgcattcagctaccggttttccacatgataatcaaacaagtcaaccaaattcagctaatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35833287 |
ccagatgccaataagaaacaaaatcaatcttctgcaccactgcattcagctaccggttttccacatgataatcaaacaagtcagccaaattcagctaatg |
35833188 |
T |
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| Q |
201 |
gtgctccaagtaaactctggaaatatattattattttcttcg |
242 |
Q |
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| T |
35833187 |
gtgctccaagtaaactctggaaatatattattattttcttcg |
35833146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 4972655 - 4972773
Alignment:
| Q |
8 |
aataaccttgcagctgcaccttatagcggtggacctactatacaaatcagtgttattccaatttcaataagtagtggatctttcccggctgtgccagatg |
107 |
Q |
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| T |
4972655 |
aataaccttccagccgcaccttatagtggtggacctaaaacagatttcagtaaccttccaattagcattagtagtggatcttttccagctgttccagatg |
4972754 |
T |
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| Q |
108 |
ccaataagaaacaaaatca |
126 |
Q |
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| T |
4972755 |
cgaataagaaacaaaatca |
4972773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 4990563 - 4990681
Alignment:
| Q |
8 |
aataaccttgcagctgcaccttatagcggtggacctactatacaaatcagtgttattccaatttcaataagtagtggatctttcccggctgtgccagatg |
107 |
Q |
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||||||||| |||| ||||||||||| |||||||||| | | | ||||| |||||||| || |||||||||||||| || ||||| ||||||| |
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| T |
4990563 |
aataaccttccagccgcaccttatagtggtggacctaaaacagatttcagtaaccttccaattagcattagtagtggatcttttccagctgttccagatg |
4990662 |
T |
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| Q |
108 |
ccaataagaaacaaaatca |
126 |
Q |
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| T |
4990663 |
cgaataagaaacaaaatca |
4990681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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