View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470_low_1 (Length: 467)
Name: NF1470_low_1
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 426
Target Start/End: Complemental strand, 41942721 - 41942290
Alignment:
| Q |
14 |
tacttcattctttgggttcagtgcccaaattttctttttaagaatgattggtcttactaagtcaaactctcatcatctgtcagggttgctttttgcaccc |
113 |
Q |
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| T |
41942721 |
tacttcattctttgggttcagtgcccaaattttctttttaagaatgattggtcttactaagtcaaactctcatcatctgtcagggttgctttttgcaccc |
41942622 |
T |
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| Q |
114 |
tttaatttttgtttatagggctccaatatgtgtgcttcaacatttttctcaaa-cgtgcatttctaaaactattttcacaactcgtannnnnnngaataa |
212 |
Q |
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| T |
41942621 |
tctaagttttgtttatagggctccaatatgtgtgcttcaacatttttctcaaagcgtgcatttctaaaaatattttcacaactcgtatttttttgaataa |
41942522 |
T |
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| Q |
213 |
gttaaacca--gtccatctaaattagcattaaagagaatcgaatttgagac----------------ctcgaatgtctcaagtcaacatcatcaaaccga |
294 |
Q |
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| T |
41942521 |
gctaaaccagtgtccatctaaattagcattaaagagaatcaaatttgagactttaaggaggagtacattcgaatgtctcaagtcaacatcatcaaaccga |
41942422 |
T |
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| Q |
295 |
ctcaagtgagttgaaaaacacatattgctttcatggatggttaaaattagattgttgatgggaaagacattgaaatattcaacttataactttagcaaaa |
394 |
Q |
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| T |
41942421 |
ctcaagtgggttgaaaaacacatattgcttccatggatggttaaaattagattgttgatgggaaagacattgaaatattcaacttataactttagcaaaa |
41942322 |
T |
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| Q |
395 |
gtggcccaaaccaaaaggaaatgaagttcatg |
426 |
Q |
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| T |
41942321 |
gtggcccaaaccaaaaggaaatgaagttcatg |
41942290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 16951489 - 16951434
Alignment:
| Q |
211 |
aagttaaaccagtccatctaaattagcattaaagagaatcgaatttgagacctcga |
266 |
Q |
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| T |
16951489 |
aagttaaattagcccatctaaattagcattgaagagaatcgaacctgagacctcga |
16951434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 17022154 - 17022099
Alignment:
| Q |
211 |
aagttaaaccagtccatctaaattagcattaaagagaatcgaatttgagacctcga |
266 |
Q |
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| T |
17022154 |
aagttaaattagcccatctaaattagcattgaagagaatcgaacctgagacctcga |
17022099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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