View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470_low_10 (Length: 286)
Name: NF1470_low_10
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 7278726 - 7278977
Alignment:
| Q |
20 |
tttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattcacctcgccatcctcattcaccaaagcttcaattttattacca |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7278726 |
tttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattcacctcaccatcctcattcaccaaagcttcaattttattacca |
7278825 |
T |
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| Q |
120 |
ccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgggac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278826 |
ccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgggac |
7278925 |
T |
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| Q |
220 |
ccaccatttgaatttgatcaacaaattcttgcagaactatagcccttttgat |
271 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
7278926 |
ccaccatttgaatttgatcaacaaattcttgaagaacaatagcccttttgat |
7278977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 7375113 - 7374862
Alignment:
| Q |
20 |
tttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattcacctcgccatcctcattcaccaaagcttcaattttattacca |
119 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375113 |
tttttcacctccctcattcttctcttcataccccctctcttctttctccatacaattcacctcgccatcctcattcaccaaagcttcaattttattacca |
7375014 |
T |
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| Q |
120 |
ccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgggac |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375013 |
ccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttcaacttcctctgtgggac |
7374914 |
T |
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| Q |
220 |
ccaccatttgaatttgatcaacaaattcttgcagaactatagcccttttgat |
271 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
7374913 |
ccaccatttgaatttgatcaacaaattcttgaagaacaatagcccttttgat |
7374862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 7278700 - 7278783
Alignment:
| Q |
84 |
ccatcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattc |
167 |
Q |
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| T |
7278700 |
ccatcctcattcatcaaaggtcccattttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattc |
7278783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 7278542 - 7278593
Alignment:
| Q |
19 |
atttttcacctccctcattcttctcttcacaccccctctcttctttctccat |
70 |
Q |
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||||||||||||||||||||| ||| | ||||||||| ||||||| |||||| |
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| T |
7278542 |
atttttcacctccctcattctcctccttacaccccctatcttcttcctccat |
7278593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 7375139 - 7375056
Alignment:
| Q |
84 |
ccatcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattc |
167 |
Q |
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| T |
7375139 |
ccatcctcattcatcaaaggtcccattttttcacctccctcattcttctcttcataccccctctcttctttctccatacaattc |
7375056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 7375297 - 7375246
Alignment:
| Q |
19 |
atttttcacctccctcattcttctcttcacaccccctctcttctttctccat |
70 |
Q |
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||||||||||||||||||||| ||| | ||||||||| ||||||| |||||| |
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| T |
7375297 |
atttttcacctccctcattctcctccttacaccccctatcttcttcctccat |
7375246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 7278520 - 7278576
Alignment:
| Q |
87 |
tcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacacccc |
143 |
Q |
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||||||||| |||||||||||| ||| | ||| |||||||||||||| | ||||||| |
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| T |
7278520 |
tcctcattccccaaagcttcaaatttttcacctccctcattctcctccttacacccc |
7278576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 7375319 - 7375263
Alignment:
| Q |
87 |
tcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacacccc |
143 |
Q |
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||||||||| |||||||||||| ||| | ||| |||||||||||||| | ||||||| |
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| T |
7375319 |
tcctcattccccaaagcttcaaatttttcacctccctcattctcctccttacacccc |
7375263 |
T |
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