View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1470_low_12 (Length: 271)

Name: NF1470_low_12
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1470_low_12
NF1470_low_12
[»] chr1 (5 HSPs)
chr1 (3-170)||(3792093-3792255)
chr1 (140-253)||(3792253-3792366)
chr1 (183-247)||(3792560-3792624)
chr1 (183-239)||(2094384-2094440)
chr1 (183-247)||(39650196-39650260)
[»] chr4 (10 HSPs)
chr4 (104-179)||(16049417-16049492)
chr4 (183-242)||(36172165-36172224)
chr4 (186-248)||(40312807-40312869)
chr4 (186-248)||(40322883-40322945)
chr4 (183-230)||(37577271-37577318)
chr4 (183-230)||(628088-628135)
chr4 (183-237)||(12586184-12586238)
chr4 (183-228)||(34235737-34235782)
chr4 (183-247)||(24972390-24972454)
chr4 (183-247)||(33164519-33164583)
[»] chr3 (6 HSPs)
chr3 (181-253)||(4969873-4969945)
chr3 (183-247)||(6162696-6162760)
chr3 (183-247)||(15042020-15042084)
chr3 (180-228)||(42951021-42951069)
chr3 (183-238)||(47064864-47064919)
chr3 (182-247)||(19866732-19866797)
[»] chr2 (3 HSPs)
chr2 (182-250)||(20685005-20685073)
chr2 (183-248)||(11573633-11573698)
chr2 (183-253)||(20686810-20686880)
[»] chr8 (1 HSPs)
chr8 (183-253)||(37687320-37687390)
[»] chr6 (4 HSPs)
chr6 (183-247)||(35060909-35060973)
chr6 (181-247)||(14153352-14153418)
chr6 (182-239)||(23608426-23608483)
chr6 (183-228)||(31522568-31522613)
[»] scaffold1063 (1 HSPs)
scaffold1063 (183-238)||(1475-1530)
[»] scaffold0262 (1 HSPs)
scaffold0262 (183-247)||(8384-8448)
[»] chr7 (2 HSPs)
chr7 (182-250)||(5060847-5060915)
chr7 (182-238)||(42548160-42548216)
[»] chr5 (1 HSPs)
chr5 (183-247)||(6702370-6702434)


Alignment Details
Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 3 - 170
Target Start/End: Original strand, 3792093 - 3792255
Alignment:
Q  3 attcgctgccgcaaaaccctaatcctgtgttgatgttgatgttgatgatagaaagcacggtgtttt-atataggcacaactaaaccctgaaaacagttta 101  Q
    |||||||||||||||||||||||||||||||||||||||||      |||||| ||| | |||||| |||||||||||||||||||||||||||||||||    
T  3792093 attcgctgccgcaaaaccctaatcctgtgttgatgttgatg------atagaacgcaggctgtttttatataggcacaactaaaccctgaaaacagttta 3792186  T
Q  102 gggttgtgatcgggcttttgttgatgggttacccaatccagttggattgggctaaacttatatggtcag 170  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  3792187 gggttgtgatcgggcttttgttgataggttacccgatccagttggattgggctaaacttttatggtcag 3792255  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 140 - 253
Target Start/End: Original strand, 3792253 - 3792366
Alignment:
Q  140 cagttggattgggctaaacttatatggtcagcttttggaactagaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaata 239  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||  ||| |||  ||| |||| ||| ||||||    
T  3792253 cagttggattgggctaaacttttatggtcaggttttggaactagaattctgctcattacccaaatgattctactcattctcaaaataaatgtccaaaata 3792352  T
Q  240 cccttacgtgagtt 253  Q
    ||||||||||||||    
T  3792353 cccttacgtgagtt 3792366  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 3792560 - 3792624
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaatacccttacg 247  Q
    ||||||||||||||||||||||| || ||||| || | |||||||||||| ||||| ||||||||    
T  3792560 gaattctgctcattacccaaatagtttcgctcatttccaaagtaaaagtccaaaatgcccttacg 3792624  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 2094440 - 2094384
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaata 239  Q
    ||||||||||||||||||||||  ||| |||| || | |||||||| ||||||||||    
T  2094440 gaattctgctcattacccaaattgttctgctcatttccaaagtaaatgtctaaaata 2094384  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 39650196 - 39650260
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaatacccttacg 247  Q
    ||||||||||||||||| ||||  || ||||| ||||||||||||| ||| ||||| ||| ||||    
T  39650196 gaattctgctcattacctaaatggtttcgctcattcctaaagtaaatgtccaaaatgcccctacg 39650260  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 16049417 - 16049492
Alignment:
Q  104 gttgtgatcgggcttttgttgatgggttacccaatccagttggattgggctaaacttatatggtcagcttttggaa 179  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| || ||||||||    
T  16049417 gttgtgatcgggcttttgttgatgggttacccgacccagttggattgggctaaacctatatggttagattttggaa 16049492  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 36172165 - 36172224
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaataccc 242  Q
    ||||||||||||||||||||||| |||| ||| |||| |||||||||||| |||||||||    
T  36172165 gaattctgctcattacccaaatagttccactcattcccaaagtaaaagtccaaaataccc 36172224  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 40312869 - 40312807
Alignment:
Q  186 ttctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaatacccttacgt 248  Q
    ||||||||||||||||||| ||| ||||| || | |||||||||||||||||||| |||||||    
T  40312869 ttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaatactcttacgt 40312807  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 40322945 - 40322883
Alignment:
Q  186 ttctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaatacccttacgt 248  Q
    ||||||||||||||||||| ||| ||||| || | |||||||||||||||||||| |||||||    
T  40322945 ttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaatactcttacgt 40322883  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 37577318 - 37577271
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaaag 230  Q
    ||||||||||||||| |||||||||| ||||| |||||||||||||||    
T  37577318 gaattctgctcattatccaaataatttcgctcattcctaaagtaaaag 37577271  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 628088 - 628135
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaaag 230  Q
    ||||||||||||||||||||||  || ||||| |||||||||||||||    
T  628088 gaattctgctcattacccaaatggtttcgctcattcctaaagtaaaag 628135  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 12586184 - 12586238
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaa 237  Q
    ||||||||||||||||| ||| ||| |||||| |||| |||||||||||| ||||    
T  12586184 gaattctgctcattacctaaacaataccgctcattcccaaagtaaaagtcgaaaa 12586238  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 34235782 - 34235737
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaa 228  Q
    ||||| ||||||||||||||||  |||||||| |||||||||||||    
T  34235782 gaattatgctcattacccaaatggttccgctcattcctaaagtaaa 34235737  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 24972390 - 24972454
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaatacccttacg 247  Q
    ||||||||||||||||| ||| | |  ||||| ||||||||||||||||| |||| |||| ||||    
T  24972390 gaattctgctcattacctaaacagtatcgctcattcctaaagtaaaagtcaaaaacacccctacg 24972454  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 33164583 - 33164519
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaatacccttacg 247  Q
    ||||||||||||||||||||||  |||||||| |||  |||||||| ||| ||||| ||| ||||    
T  33164583 gaattctgctcattacccaaatggttccgctcattctcaaagtaaatgtccaaaatgcccctacg 33164519  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 4969873 - 4969945
Alignment:
Q  181 tagaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaatacccttacgtgagtt 253  Q
    ||||||||||||||||||||||||  |||||||| |||| |||||||||||| ||||||||| ||||||||||    
T  4969873 tagaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtcgaaaatacccctacgtgagtt 4969945  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 6162760 - 6162696
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaatacccttacg 247  Q
    ||||||||||||||||||||||  |||||||| |||| |||||||||||| ||||| ||| ||||    
T  6162760 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacg 6162696  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 15042084 - 15042020
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaatacccttacg 247  Q
    ||||||||||||||||||||| |||  ||||| |||| |||||||||||| ||||| ||| ||||    
T  15042084 gaattctgctcattacccaaacaatatcgctcattcccaaagtaaaagtcgaaaatgcccctacg 15042020  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 42951069 - 42951021
Alignment:
Q  180 ctagaattctgctcattacccaaataattccgctctttcctaaagtaaa 228  Q
    ||||||||||||||||||| |||||| |||||||| |||| ||||||||    
T  42951069 ctagaattctgctcattactcaaatacttccgctcattcccaaagtaaa 42951021  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 47064864 - 47064919
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaat 238  Q
    ||||| |||||||||||||||| |||| |||| |||| |||||||||||| |||||    
T  47064864 gaattatgctcattacccaaatgattctgctcattcccaaagtaaaagtccaaaat 47064919  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 19866732 - 19866797
Alignment:
Q  182 agaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaatacccttacg 247  Q
    |||||||||||||||||||||| | |  ||||| |||| |||||||||||| ||||| ||| ||||    
T  19866732 agaattctgctcattacccaaacagtatcgctcattcccaaagtaaaagtcaaaaatgcccctacg 19866797  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 20685005 - 20685073
Alignment:
Q  182 agaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaatacccttacgtga 250  Q
    |||||||||||||||||||||||  |||||||| |||  ||||||||||||||||||||||||||||||    
T  20685005 agaattctgctcattacccaaatggttccgctcattctcaaagtaaaagtctaaaatacccttacgtga 20685073  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 11573633 - 11573698
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaatacccttacgt 248  Q
    ||||||||||||||||||||| |||  ||||| |||| |||||||||||| ||||| ||| |||||    
T  11573633 gaattctgctcattacccaaacaatatcgctcattcccaaagtaaaagtcaaaaatgcccctacgt 11573698  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 20686880 - 20686810
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaatacccttacgtgagtt 253  Q
    ||||||||||| |||  |||||  |||||||| ||||||||||||||||| ||||| ||| | ||||||||    
T  20686880 gaattctgctcgttattcaaatgtttccgctcattcctaaagtaaaagtccaaaatgcccctgcgtgagtt 20686810  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 37687390 - 37687320
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaatacccttacgtgagtt 253  Q
    |||||||||| |||||||||||  |||||||| || | |||||||| ||| |||||| |||||||||||||    
T  37687390 gaattctgcttattacccaaatggttccgctcatttccaaagtaaatgtccaaaatatccttacgtgagtt 37687320  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 35060973 - 35060909
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaatacccttacg 247  Q
    |||||||||||||||||||||| ||||||||| || | |||||||| ||| ||||| ||| ||||    
T  35060973 gaattctgctcattacccaaatgattccgctcatttccaaagtaaatgtccaaaatgcccctacg 35060909  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 14153352 - 14153418
Alignment:
Q  181 tagaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaatacccttacg 247  Q
    |||||||||||||||||||||||| |||  |||| |||| |||||||| | | ||||||||| ||||    
T  14153352 tagaattctgctcattacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctacg 14153418  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 23608426 - 23608483
Alignment:
Q  182 agaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaata 239  Q
    ||||||||||||||||  ||||| |||||| || |||| ||| |||||||||||||||    
T  23608426 agaattctgctcattattcaaatgattccgttcattcccaaaataaaagtctaaaata 23608483  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 31522613 - 31522568
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaa 228  Q
    ||||||||||||||||||||||  |||||||| |||| ||||||||    
T  31522613 gaattctgctcattacccaaatggttccgctcattcccaaagtaaa 31522568  T

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Target: scaffold1063 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 1475 - 1530
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaat 238  Q
    ||||||||||||||||||||||  |||||||| ||  ||||||||||||| |||||    
T  1475 gaattctgctcattacccaaatggttccgctcatttttaaagtaaaagtccaaaat 1530  T

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Target: scaffold0262 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 8384 - 8448
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaatacccttacg 247  Q
    ||||||||||| |||||||||   ||| |||| || |||||||||| || |||||||||||||||    
T  8384 gaattctgctctttacccaaacgtttctgctcatttctaaagtaaatgtgtaaaatacccttacg 8448  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 5060847 - 5060915
Alignment:
Q  182 agaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaatacccttacgtga 250  Q
    |||||||| ||||||| ||||||  |||||||| |||| |||||||||||  ||||| | |||||||||    
T  5060847 agaattctactcattatccaaatggttccgctcattcccaaagtaaaagttgaaaatgctcttacgtga 5060915  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 42548160 - 42548216
Alignment:
Q  182 agaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaat 238  Q
    |||||||||||||||||||||||  ||  |||| |||| |||||||||||| |||||    
T  42548160 agaattctgctcattacccaaatcgttttgctcattcccaaagtaaaagtccaaaat 42548216  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 6702370 - 6702434
Alignment:
Q  183 gaattctgctcattacccaaataattccgctctttcctaaagtaaaagtctaaaatacccttacg 247  Q
    |||||||||||||| |||||||| || ||||| |||  |||||||||||| ||||| ||| ||||    
T  6702370 gaattctgctcattgcccaaatagtttcgctcattctcaaagtaaaagtcaaaaatgcccatacg 6702434  T

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