View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470_low_2 (Length: 450)
Name: NF1470_low_2
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 27900898 - 27901342
Alignment:
| Q |
1 |
tcacatgaacattttctctcgaggtggtccttgtaatgttttttatttattcttcattaacttgtttttagtccttatgtaca--taaacatatgttttc |
98 |
Q |
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| T |
27900898 |
tcacatgaacattttctctcgaggtggtccttgtaatgttttttatttattcttcattaacttgtttttagtccttatgtacacataaacatatgttttc |
27900997 |
T |
|
| Q |
99 |
tccaacatataannnnnnnnnnn-------catttgagtttctatcacacaacaaagaaaaattatattatcaagactaacacaaacaatgaggattaat |
191 |
Q |
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| T |
27900998 |
tccaacatataatataatttttttttttttcatttgagtttctatcacataacaaagaaaaattatattatcaagactaacacaaacaatgaggattaat |
27901097 |
T |
|
| Q |
192 |
caacaggttagtccagcagaaaatgctagtcttctgcaatgtgaagaactaataatcaaattacaactcaaagaggtgttcatatttaaagatcaatgat |
291 |
Q |
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| T |
27901098 |
caacaggttagtccagcagaaaatgctagtcttctgcaatgtgaagaactaataatcaaattacaactcaaagaggtgttcatatttaaagatcaatgat |
27901197 |
T |
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| Q |
292 |
gccttaaatatgattaactcccgttcctatcgaaattcaagtaacaaggagggttaaaatgaaaatagggttgatcctgagacttttggtgtctagacaa |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27901198 |
gccttaaatatgattaactcccgttcctatcgaaattcaagtaacaaggagggttaaaatgaaaatagggttgatcctgagacttttggtgtctagacaa |
27901297 |
T |
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| Q |
392 |
attaaaagaatggttccctaactataacatttgaagtgattttct |
436 |
Q |
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| T |
27901298 |
attaaaagaatggttccctaactataacatttgaagtgattttct |
27901342 |
T |
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