View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470_low_21 (Length: 249)
Name: NF1470_low_21
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470_low_21 |
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| [»] scaffold1819 (2 HSPs) |
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| [»] scaffold1104 (2 HSPs) |
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Alignment Details
Target: scaffold1819 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: scaffold1819
Description:
Target: scaffold1819; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 997 - 754
Alignment:
| Q |
1 |
tgttcaactgcaacatgtcatttatttcgaaaattttgacactataaagttttatgggctctatagaacac--cattaatacggccaaagaggaggtaat |
98 |
Q |
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| T |
997 |
tgttcaatttcaacatttcattcatttcgaaaattttgacactataaagttttatgggctctagagaacacaccattaatacggccaaagaggagataat |
898 |
T |
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| Q |
99 |
taaaagagttataaagccacaagaatcttatatccctttcgctatcattgctaattcttctactagagaagaaggaacaagtggaacacgaggctgcaat |
198 |
Q |
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| T |
897 |
taaaagagttataaagccacaaatatctcctatccctttctctatcactgctaattcttctactagagaggaaggaacaagtggaacaccaggttgcaat |
798 |
T |
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| Q |
199 |
gtgtatgcatgcaaaacatgcaacaaaactttcacttcttttca |
242 |
Q |
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| T |
797 |
gtgtatgcatgcaaaacatgtaaaaaaacttttacttcatttca |
754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1819; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 218 - 455
Alignment:
| Q |
3 |
ttcaactgcaacatgtcatttatttcgaaaattttgacactataaagttttatgggctctatagaacac--cattaatacggccaaagaggaggtaatta |
100 |
Q |
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| T |
218 |
ttcaacttcaacttttcattcattttggaacttttgagattataaaattttatgggctctagagaacacgccattaatatggccaaggaggagataatta |
317 |
T |
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| Q |
101 |
aaagagttataaagccacaagaatcttatatccctttcgctatcattgctaattcttctactagagaagaaggaacaagtggaacacgaggctgcaatgt |
200 |
Q |
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| T |
318 |
aaagagttataaaatcaccacaatcttctatctctttctctatcactgccaattctt------gagaaggagaaacaagtgaaagagcaggctgcaatgt |
411 |
T |
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| Q |
201 |
gtatgcatgcaaaacatgcaacaaaactttcacttcttttcact |
244 |
Q |
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| T |
412 |
gtatgcatccaaaacatgtaacaaaactttcatttcatttcact |
455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: scaffold1104
Description:
Target: scaffold1104; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 2519 - 2276
Alignment:
| Q |
1 |
tgttcaactgcaacatgtcatttatttcgaaaattttgacactataaagttttatgggctctatagaacac--cattaatacggccaaagaggaggtaat |
98 |
Q |
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| T |
2519 |
tgttcaatttcaacatttcattcatttcgaaaattttgacactataaagttttatgggctctagagaacacaccattaatacggccaaagaggagataat |
2420 |
T |
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| Q |
99 |
taaaagagttataaagccacaagaatcttatatccctttcgctatcattgctaattcttctactagagaagaaggaacaagtggaacacgaggctgcaat |
198 |
Q |
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| T |
2419 |
taaaagagttataaagccacaaatatctcctatccctttctctatcactgctaattcttctactagagaggaaggaacaagtggaacaccaggttgcaat |
2320 |
T |
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| Q |
199 |
gtgtatgcatgcaaaacatgcaacaaaactttcacttcttttca |
242 |
Q |
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| T |
2319 |
gtgtatgcatgcaaaacatgtaaaaaaacttttacttcatttca |
2276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 34 - 244
Target Start/End: Original strand, 1771 - 1977
Alignment:
| Q |
34 |
ttttgacactataaagttttatgggctctatagaacac--cattaatacggccaaagaggaggtaattaaaagagttataaagccacaagaatcttatat |
131 |
Q |
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| T |
1771 |
ttttgagattataaaattttatgggctctagagaacacgccattaatatggccaaggaggagataattaaaagagttataaaatcaccacaatcttctat |
1870 |
T |
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| Q |
132 |
ccctttcgctatcattgctaattcttctactagagaagaaggaacaagtggaacacgaggctgcaatgtgtatgcatgcaaaacatgcaacaaaactttc |
231 |
Q |
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| T |
1871 |
ctctttctctatcactgccaattctt------gagaaggagaaacaagtgaaagagcaggctgcaatgtgtatgcatccaaaacatgtaacaaaactttc |
1964 |
T |
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| Q |
232 |
acttcttttcact |
244 |
Q |
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| T |
1965 |
atttcatttcact |
1977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 34713957 - 34714004
Alignment:
| Q |
195 |
caatgtgtatgcatgcaaaacatgcaacaaaactttcacttcttttca |
242 |
Q |
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| T |
34713957 |
caatgtgtatgcatgcaaaacatgcaaaaaaactttcacttcatttca |
34714004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 34710333 - 34710374
Alignment:
| Q |
195 |
caatgtgtatgcatgcaaaacatgcaacaaaactttcacttc |
236 |
Q |
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| T |
34710333 |
caatgtgtatgcatgcaaaacatgcaacaaaacattcacttc |
34710374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 34406642 - 34406595
Alignment:
| Q |
195 |
caatgtgtatgcatgcaaaacatgcaacaaaactttcacttcttttca |
242 |
Q |
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| T |
34406642 |
caatgtgtatgcatgcaaaacatgtaacaaatctttcacttcatttca |
34406595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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