View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470_low_23 (Length: 247)
Name: NF1470_low_23
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 6994689 - 6994462
Alignment:
| Q |
16 |
gtgatttgactcaagtagttgtgaaaggttaatctcaaacatgattgaagaaaaaagcttacaacaaaaagaattcatatggaagaagaa---------- |
105 |
Q |
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| T |
6994689 |
gtgatttaactcaagtagttgtgaaaggttaatctcaaacatgattgaagaagaaagcttacaacaaaaagaattcatacggaagaagaagctcatgaat |
6994590 |
T |
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| Q |
106 |
--acacttcattattcaccaatctagttttagaaatgagataggacacacacatatattctatatacatatacaattgttactagagttagttattgatc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
6994589 |
agacacttcattattcaccaatctagttttagaaatgagataggactgacacatatatactatatccatatacaattgttactagagttagttattgatc |
6994490 |
T |
|
| Q |
204 |
tagaagtataactacttaaactgcatat |
231 |
Q |
| |
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|||||||||||||||||||||| ||||| |
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| T |
6994489 |
tagaagtataactacttaaacttcatat |
6994462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 33190263 - 33190223
Alignment:
| Q |
108 |
acttcattattcaccaatctagttttagaaatgagatagga |
148 |
Q |
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||||||||||||||||||||||||||| || |||||||||| |
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| T |
33190263 |
acttcattattcaccaatctagttttacaagtgagatagga |
33190223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 23913260 - 23913296
Alignment:
| Q |
194 |
gttattgatctagaagtataactacttaaactgcata |
230 |
Q |
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| T |
23913260 |
gttattgatctagaagtataactacctaaactgcata |
23913296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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