View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1470_low_24 (Length: 245)
Name: NF1470_low_24
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 6542972 - 6542746
Alignment:
| Q |
1 |
ctcaattttattaacagatgccaacatacaccatggatacttcaaaaatgccgagacaaaactttcttcagaccaaccccatttcttatagacatcaatc |
100 |
Q |
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| T |
6542972 |
ctcaattttattaacagatgccaacatacaccatggatacttcaaaaatgccgagacaaaactttcttcagaccaaccccatttcttatagacatcaatc |
6542873 |
T |
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| Q |
101 |
ttcctttcccaaaggaattttctattaatcttagcacgcaatgcaacaatgaaaaacgttgtttcgggtttaaatcctaattcctttacttccaccaccg |
200 |
Q |
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| T |
6542872 |
ttcctttcccaaaggaattttctattaatcttagcacgcaatgcaacaatgaaaaacgttgtttcgggtttaaatcctaattcctttacttccaccaccg |
6542773 |
T |
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| Q |
201 |
ccttctcaaatcttggagggttctcag |
227 |
Q |
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| T |
6542772 |
ccttctcaaatcttggagggttctcag |
6542746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 6534209 - 6534031
Alignment:
| Q |
15 |
cagatgccaacatacaccatggatacttcaaaaatgccgagacaaaactttcttcagaccaaccccatttcttatagacatcaatcttcctttcccaaag |
114 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| | | | |||| ||||||||||||||||||||||| | || |||||||||||||||| | |
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| T |
6534209 |
cagatgccaacatacaccatggatacttcaaaaatgctgaggcgataatttcatcagaccaaccccatttcttatacaaataaatcttcctttcccaatg |
6534110 |
T |
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| Q |
115 |
gaattttctattaatcttagcacgcaatgcaacaatgaaaaacgttgtttcgggtttaaatcctaattcctttacttcc |
193 |
Q |
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| T |
6534109 |
ggatttgctattaatcttagcccgcaatgcgacgatgaaaagggttgttttggggtcaaatcctaattctttaacttcc |
6534031 |
T |
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