View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1470_low_3 (Length: 439)

Name: NF1470_low_3
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1470_low_3
NF1470_low_3
[»] chr6 (13 HSPs)
chr6 (271-439)||(649724-649892)
chr6 (271-439)||(18051107-18051275)
chr6 (7-196)||(9199153-9199342)
chr6 (9-199)||(17079089-17079279)
chr6 (271-439)||(17078849-17079017)
chr6 (271-439)||(9198910-9199078)
chr6 (16-199)||(17873716-17873899)
chr6 (7-199)||(18051347-18051539)
chr6 (271-439)||(11060520-11060688)
chr6 (280-439)||(17873477-17873636)
chr6 (16-197)||(11060759-11060940)
chr6 (163-199)||(649964-650000)
chr6 (366-439)||(19236906-19236979)
[»] chr4 (15 HSPs)
chr4 (7-196)||(53486854-53487043)
chr4 (7-196)||(30273713-30273902)
chr4 (7-196)||(34322220-34322409)
chr4 (7-196)||(42778288-42778477)
chr4 (7-196)||(18106457-18106646)
chr4 (7-199)||(20395646-20395838)
chr4 (271-439)||(53780359-53780527)
chr4 (271-436)||(34321980-34322145)
chr4 (271-439)||(20395896-20396064)
chr4 (16-199)||(53780104-53780287)
chr4 (271-426)||(10563002-10563157)
chr4 (271-439)||(42778552-42778720)
chr4 (16-199)||(10563207-10563390)
chr4 (271-439)||(53486594-53486779)
chr4 (16-78)||(29213000-29213062)
[»] chr3 (15 HSPs)
chr3 (7-196)||(48191849-48192038)
chr3 (271-439)||(47537582-47537750)
chr3 (7-179)||(33121235-33121407)
chr3 (271-439)||(48192113-48192281)
chr3 (271-436)||(26846181-26846346)
chr3 (7-199)||(47537318-47537510)
chr3 (297-439)||(50544564-50544706)
chr3 (18-199)||(26845928-26846109)
chr3 (31-198)||(50544298-50544465)
chr3 (310-439)||(23818924-23819053)
chr3 (271-439)||(43121324-43121492)
chr3 (7-85)||(19222173-19222251)
chr3 (24-198)||(43121565-43121739)
chr3 (27-198)||(23818647-23818818)
chr3 (124-163)||(19222260-19222299)
[»] chr2 (5 HSPs)
chr2 (7-196)||(1380132-1380321)
chr2 (7-196)||(2999649-2999838)
chr2 (272-439)||(1380397-1380564)
chr2 (278-439)||(11028191-11028352)
chr2 (18-71)||(11027161-11027214)
[»] chr5 (9 HSPs)
chr5 (7-196)||(4415601-4415790)
chr5 (279-439)||(7000423-7000583)
chr5 (271-439)||(20208377-20208545)
chr5 (22-199)||(7000663-7000840)
chr5 (271-439)||(6049535-6049703)
chr5 (24-199)||(6049290-6049465)
chr5 (271-388)||(4415409-4415526)
chr5 (7-199)||(20208617-20208809)
chr5 (7-77)||(4923284-4923354)
[»] chr7 (7 HSPs)
chr7 (7-196)||(34231749-34231938)
chr7 (276-439)||(34232018-34232181)
chr7 (271-439)||(4077589-4077757)
chr7 (16-199)||(7458569-7458752)
chr7 (7-148)||(29113498-29113639)
chr7 (20-199)||(4077338-4077517)
chr7 (288-328)||(7458440-7458480)
[»] chr1 (14 HSPs)
chr1 (271-439)||(30110582-30110751)
chr1 (271-439)||(10710819-10710987)
chr1 (51-196)||(17708073-17708218)
chr1 (271-439)||(26720947-26721115)
chr1 (10-198)||(10711060-10711248)
chr1 (271-437)||(47106343-47106509)
chr1 (271-388)||(17708293-17708410)
chr1 (7-193)||(30110829-30111015)
chr1 (24-199)||(47106579-47106753)
chr1 (16-199)||(26720720-26720903)
chr1 (24-198)||(21335269-21335442)
chr1 (20-65)||(28097993-28098038)
chr1 (297-417)||(28097645-28097765)
chr1 (368-439)||(7396372-7396443)
[»] scaffold0007 (2 HSPs)
scaffold0007 (7-199)||(182179-182371)
scaffold0007 (271-439)||(182429-182597)
[»] chr8 (9 HSPs)
chr8 (16-199)||(23680221-23680404)
chr8 (16-197)||(17658890-17659071)
chr8 (271-439)||(17659145-17659313)
chr8 (24-189)||(45255736-45255901)
chr8 (271-431)||(45255495-45255655)
chr8 (271-387)||(23680476-23680592)
chr8 (304-439)||(36157502-36157637)
chr8 (16-68)||(26031551-26031603)
chr8 (20-65)||(36157220-36157265)
[»] scaffold0912 (2 HSPs)
scaffold0912 (271-439)||(2531-2699)
scaffold0912 (170-199)||(2770-2799)
[»] scaffold0179 (4 HSPs)
scaffold0179 (271-436)||(7842-8011)
scaffold0179 (271-436)||(12776-12945)
scaffold0179 (7-199)||(7578-7770)
scaffold0179 (27-199)||(12532-12704)


Alignment Details
Target: chr6 (Bit Score: 165; Significance: 4e-88; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 271 - 439
Target Start/End: Complemental strand, 649892 - 649724
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  649892 gctctacaccaagagaaaacaagcctgccatcgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 649793  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  649792 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 649724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 271 - 439
Target Start/End: Complemental strand, 18051275 - 18051107
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  18051275 gctcaacaccaagagagaacaaacctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaagagaccgatcctaa 18051176  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18051175 ccacttatcataccaaaacaaagtgtctgaaccatcccccaacttcttagacacacactccccaaacca 18051107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 9199342 - 9199153
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | |||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| |||||    
T  9199342 tccaagcaaataaagaaaccttcaacgacacctggttatgccaaatcaaagatgatgcatgatccctaagaggaacgtctctagaaatcagcatatgata 9199243  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataa 196  Q
    |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||    
T  9199242 tgaaccgcgaacagagtaacccacaatatggtctggcaaccaaacccacctgtctgaaacagaatctcgcaaagaaacatcagtcaataa 9199153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 17079279 - 17079089
Alignment:
Q  9 caagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatg 108  Q
    |||||| ||| |||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| |||| |||||||||||||||||    
T  17079279 caagaaaatagagaaaccttcaacggcacctggttatgccagatcaaagatgttgcgggatccctaagaggaacgtccctagtagtcagcatgtgatatg 17079180  T
Q  109 aaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
    ||||||||||||  |||||| ||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17079179 aaccacgaacagtataaccctcaacaaggtctggcaaccacacccacttgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 17079089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 271 - 439
Target Start/End: Complemental strand, 17079017 - 17078849
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||    
T  17079017 gctctacaccaagagagaacaaacctgccaccgtaatggatttgttctcagaaagaacaaacaacctaggaaaccgctcacaaaaagagaccgatcctaa 17078918  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    |||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  17078917 ccacttatcataccaaaataaagtgtctgaaccgtcccccaacttcttagacacacactccccaaacca 17078849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 271 - 439
Target Start/End: Complemental strand, 9199078 - 9198910
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    ||||||||| ||||||||||||| ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  9199078 gctctacacaaagagaaaacaagtctgccaccgaaatgaatttgttcacagaaagatcgaacaacctaggaaaccgctcacaaaaagacaccgaccctaa 9198979  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  9198978 ccacttatcataccaaaacaaagtgtctgaaccattccccaacttcttagacacacactccccaaacca 9198910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 17873899 - 17873716
Alignment:
Q  16 ataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacg 115  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||  | ||||||| || |||||| ||||| ||    
T  17873899 ataaagataccttcaacggcacctgtttatgccagatcaaagatgctgcaagatccctaagaggaacgtcctttgaagtcaacaagtgataagaaccgcg 17873800  T
Q  116 aacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
    ||||| |||||||  |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17873799 aacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacaaaatcttgcagagaaacatcagtcaataaagc 17873716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 7 - 199
Target Start/End: Complemental strand, 18051539 - 18051347
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | |||||||||||||||||||||||||||||||||| ||||||||  | || ||||||||||||| |||||| |||| ||||| |||||||||    
T  18051539 tccaagcaaataaagaaaccttcaacggcacctggttatgccagatcaaagagaccgcgggatccctaagagaaacgtccctagtagtcaccatgtgata 18051440  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
     ||||||||||||| ||||||| ||| |||||| | ||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||    
T  18051439 agaaccacgaacagtgtaaccctcaacagggtcagacaaccacacccacctgtctgaaataaaatcttgcaaataaacattagtcaataaagc 18051347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 271 - 439
Target Start/End: Complemental strand, 11060688 - 11060520
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| ||||  |||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||    
T  11060688 gctccacaccaagagagaacagacctgccactgtaatgtatttgttctcagaaagatcgaacaacctaggaaacctctcacagaaagaaaccgaacctaa 11060589  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    |||| ||||| ||||||||||||| ||| | ||||||||||||||| ||||||||||||||||||||||    
T  11060588 ccacctatcaaaccaaaacaaagtatctgacccatcccccaacttcatagacacacactccccaaacca 11060520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 280 - 439
Target Start/End: Complemental strand, 17873636 - 17873477
Alignment:
Q  280 caagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaaccacttatc 379  Q
    ||||||| ||||| | ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  17873636 caagagagaacaaacttgccaccgtaatgtatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaagaaaccaaacctaaccacttatc 17873537  T
Q  380 ataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
      | |||||||| |||||| |||||||||||||||||||||||||||||||||| |||||    
T  17873536 gaatcaaaacaacgtgtctgaaccatcccccaacttcttagacacacactccccgaacca 17873477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 11060940 - 11060759
Alignment:
Q  16 ataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  | | ||||| |||  |||| ||||| ||    
T  11060940 ataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaagaacgtccgttgtagtcaacatacgataagaaccgcg 11060841  T
Q  116 aacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaa 197  Q
    ||||| ||||||| ||| |||||| |||||||||||||||||||| |||||| ||||| ||| ||||| |||||||||||||    
T  11060840 aacagtgtaaccctcaaaagggtcaggcaaccacacccacctgtcagaaacataatctagcagagaaatatcagtcaataaa 11060759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 650000 - 649964
Alignment:
Q  163 aaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
    |||||||||||||||||||||||||||||||||||||    
T  650000 aaacaaaatcttgcaaagaaacatcagtcaataaagc 649964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 19236906 - 19236979
Alignment:
Q  366 cctaaccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    |||||||| ||||||||||||||||| || ||  | | |||| ||| |||||| |||||||| |||||||||||    
T  19236906 cctaaccatttatcataccaaaacaacgtatcagaccaatcctccaccttcttcgacacacattccccaaacca 19236979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 6e-84; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 53487043 - 53486854
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | |||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||    
T  53487043 tccaagcaaataaagaaaccttcaacgacacctggttatgccaaatcaaagatgttgcgggatccctaagaggaacgtctcgagaagtcagcatgtgata 53486944  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  53486943 tgaaccacgaacagagtaacccacaatagggtctggcaaccacactcacctgtctgaaacaaaatctcgcaaagaaacatcagtcaataa 53486854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 30273902 - 30273713
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | ||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30273902 tccaagcaaataaagaaaccttcaacggcacctgattatgccagatcaaagatgatgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 30273803  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataa 196  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  30273802 tgaaccacgaacagagtaacccacaaaagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaaaaaatatcaatcaataa 30273713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 34322409 - 34322220
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | |||||||||||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34322409 tccaagcaaataaagaaaccttcaacgacacctgattatgccagatcaaagatgatgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 34322310  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataa 196  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34322309 tgaaccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataa 34322220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 42778288 - 42778477
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||| |||||    
T  42778288 tccaagcaaataaagaaaccttcaacggcacctggttatgccaaatcaaagatgttgcaggatccctcggaggaacgtctctagaagtcagcatatgata 42778387  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataa 196  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||    
T  42778388 tgaaccgcgaacagagtaacccacaataggatctggcaaccaaacccacctatctgaaacagaatcttgcaaagaaacatcagtcaataa 42778477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 18106646 - 18106457
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | ||||||||||||||||||||||||   ||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  18106646 tccaagcaaataaagaaaccttcaacggcacctaactatgccagatcaaagatgatgcaggatccctaagaggaacgtctctagaggtcagcatgtgata 18106547  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataa 196  Q
    ||||||| |||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18106546 tgaaccaagaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataa 18106457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 20395646 - 20395838
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | |||||||||||||||||||||||||||||||||| ||||||||  |||| ||||||||||||| |||||| |||| |||||||||||||||    
T  20395646 tccaagcaaataaagaaaccttcaacggcacctggttatgccagatcaaagagactgcgggatccctaagagaaacgtccctagtagtcagcatgtgata 20395745  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
     ||||||||||||| ||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20395746 agaaccacgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 20395838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 271 - 439
Target Start/End: Original strand, 53780359 - 53780527
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  53780359 gctcaacaccaagagagaacaaacctgccatcgtaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaagaaaccgaacctaa 53780458  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    ||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||    
T  53780459 ccacttatcgtaccaaaacaaagtgtctgaaccatcccctaacttcttagacacacactccccgaacca 53780527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 271 - 436
Target Start/End: Complemental strand, 34322145 - 34321980
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||| |||    
T  34322145 gctcaacaccaagagagaacaagtctgccaccgtaatggatttgttctcagcaagatcgaacaacctaggaaaccgctcacacaaagaaactgatcataa 34322046  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaa 436  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  34322045 ccacctatcataccaaaacaaagtgtcagaaccatcccccaacttcttagacacacactccccaaa 34321980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 271 - 439
Target Start/End: Original strand, 20395896 - 20396064
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| ||||| ||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  20395896 gctcaacaccaagagagaacaaacctgcgaccgaaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaagagaccgatcctaa 20395995  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    |||||| || ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  20395996 ccacttttcgtaccaaaacaacgtgtctgaaccatcccccaacttcttagacacacactccccaaacca 20396064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 53780104 - 53780287
Alignment:
Q  16 ataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacg 115  Q
    ||||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||  | ||||||| || |||||||||||| ||    
T  53780104 ataaagataccttcaacggcacctgtttatgccagatcaaagatgttgcaggatccctaagaggaacgtcctttgaagtcaacaagtgatatgaaccgcg 53780203  T
Q  116 aacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
    ||||| |||||||  |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  53780204 aacagtgtaaccctgaataggatctggcaaccacacccacctgtctgaaacaaaatcttgcagagaaacatcagtcaataaagc 53780287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 271 - 426
Target Start/End: Complemental strand, 10563157 - 10563002
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| ||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||    
T  10563157 gctcaacaccaagagagaacaaacctgccaccgtaatgggtttgttctcagaaagatcaaacaacctaggaaactgctcacaaaaagaaaccgaacctaa 10563058  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacac 426  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  10563057 ccacttatcgtaccaaaacaaagtgtctgaaccatcccccaacttcttagacacac 10563002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 271 - 439
Target Start/End: Original strand, 42778552 - 42778720
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    ||||||||||||||||||||||  ||||||||| |||| |||| ||| |||| ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  42778552 gctctacaccaagagaaaacaaatctgccaccgaaatgaatttattcacagagagatcgaacaacctaggaaaccgctcacaaaaagacaccgaccctaa 42778651  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    ||| |||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||    
T  42778652 ccatttatcaaaccaaaacaaagtgtctgaaccattccccaacttcttagacacacactctccaaacca 42778720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 10563390 - 10563207
Alignment:
Q  16 ataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacg 115  Q
    ||||||| |||||||||| |||||| |||||||| |||||||| ||||||||||||||||||||||||||  | ||||||| || |||||| ||||| ||    
T  10563390 ataaagataccttcaacgtcacctgtttatgccagatcaaagaagctgcaggatccctaagaggaacgtcctttgaagtcaacaagtgataagaaccgcg 10563291  T
Q  116 aacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
    ||||| |||||||  |||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  10563290 aacagtgtaaccctgaataggatctggcaaccacacccacctgtctaaaacaaaatcttgcagagaaacatcagtcaataaagc 10563207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 271 - 439
Target Start/End: Complemental strand, 53486779 - 53486594
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaacc-------- 362  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||            
T  53486779 gctctacaccaagagaaaacaagtctgccatcgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcaccaaaagaaaccgatcacca 53486680  T
Q  363 ---------gatcctaaccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
             |||| ||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||    
T  53486679 aaagaaaccgatcataaccacttatcataccaaaacaaagtgtctgagccatcccccaacatcttagacacacactccccaaacca 53486594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 29213062 - 29213000
Alignment:
Q  16 ataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagag 78  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  29213062 ataaagataccttcaacggcacctgtttatgccagatcaaagatgctgcaggatccctaagag 29213000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 4e-79; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 48191849 - 48192038
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | |||||||| |||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48191849 tccaagcaaataaagaagccttcaacggcacctgattatgccagatcaaagatgatgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 48191948  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataa 196  Q
    |||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48191949 tgaaccacgaacagagtaacccaccaaagggtctggaaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataa 48192038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 271 - 439
Target Start/End: Original strand, 47537582 - 47537750
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| ||||  |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47537582 gctcaacaccaagagagaacagacctgccactgtaatggatttgttctcagaaagatcgaacaacctagtaaaccgctcacaaaaagaaaccgatcctaa 47537681  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47537682 ccacctatcataccaaaacaaagtgtctgaaccatcccccaacttcttagacacacactccccaaacca 47537750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 7 - 179
Target Start/End: Complemental strand, 33121407 - 33121235
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | |||| ||||||||||||||||||||  ||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  33121407 tccaagcaaataaggaaaccttcaacggcacctgactatgccagatcaaagatgatgcaggatccctaagaggaacgtcgctagaagtcagcatgtgata 33121308  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaa 179  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||    
T  33121307 tgaaccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaa 33121235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 271 - 439
Target Start/End: Original strand, 48192113 - 48192281
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| ||||||  ||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| |||||| ||||||||||    
T  48192113 gctcaacaccaagagagaacaagtttgccaccgtaatggatttgttctcagaaaaatcgaacaacctagaaaaccgcccacacaaagaagccgatcctaa 48192212  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  48192213 ccacttatcataccaaaacaaagtgtcaaaaccatcccccaacttcttagacacacactccccaaacca 48192281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 271 - 436
Target Start/End: Original strand, 26846181 - 26846346
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| ||||| |||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| |||||    
T  26846181 gctcaacaccaagagagaacaatcctgccaccgtaatagatttgttctcagcaagatcaaacaacctaggaaaccgctcacacaaagaaaccgaccctaa 26846280  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaa 436  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26846281 ccacttatcaaaccaaaacaaagtgtctgaaccatcccccaacttcttagacacacactccccaaa 26846346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 47537318 - 47537510
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | |||||||||||||||||| || ||||||||||||||||||| ||||| | ||||||||||||| ||||||  | | |||||||| ||||||    
T  47537318 tccaagcaaataaagaaaccttcaacgacatctggttatgccaaatcaaatatgctacgggatccctaagagaaacgtcctttgtagtcagcaagtgata 47537417  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
    |||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||    
T  47537418 tgaaccacgaacagtgtaaccctcaacagggtctggcaaccacacccacctgtctaaaacaaaatctagcagaaaaacatcagtcaataaagc 47537510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 297 - 439
Target Start/End: Original strand, 50544564 - 50544706
Alignment:
Q  297 gccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaaccacttatcataccaaaacaaagtgt 396  Q
    |||||||||||||||||||||||| ||||||| ||||| | ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50544564 gccaccgtaatggatttgttctcataaagatcaaacaatcgaggaatccggtcacaaaaagaaaccgatcctaaccacttatcataccaaaacaaggtgt 50544663  T
Q  397 ctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    |  |||||||  ||||||| || ||||||||||||||||||||    
T  50544664 cagaaccatcaaccaactttttcgacacacactccccaaacca 50544706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 26845928 - 26846109
Alignment:
Q  18 aaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacgaa 117  Q
    ||||| |||||||||||| ||||| |||||||||||||||||| || ||||||||||||| |  | ||  | ||||||| || |||||| ||||| ||||    
T  26845928 aaagagaccttcaacggcgcctgggtatgccaaatcaaagatgttgtaggatccctaagaagtgcatcatttgaagtcaacaagtgataagaaccgcgaa 26846027  T
Q  118 cagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
    ||| ||||||| ||| |||||| ||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||    
T  26846028 cagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataaagc 26846109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 31 - 198
Target Start/End: Original strand, 50544298 - 50544465
Alignment:
Q  31 acggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacgaacagagtaacccac 130  Q
    ||||||||||||| ||||||||||||||||||||| |||||  |||||||| |||  | | ||||| ||   |||| ||||| ||||| ||||||||| |    
T  50544298 acggcacctggttttgccaaatcaaagatgctgcatgatccgcaagaggaatgtcctttgtagtcaacaatagataagaaccgcgaactgagtaaccctc 50544397  T
Q  131 aatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaag 198  Q
    |  ||||||||||| ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  50544398 accagggtctggcagccacacccatctgtctgaaacaaattcttgcagagaaacatcagtcaataaag 50544465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 310 - 439
Target Start/End: Original strand, 23818924 - 23819053
Alignment:
Q  310 atttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaaccacttatcataccaaaacaaagtgtctaaaccatcccc 409  Q
    ||||||||||| ||||||| || |  | |||||||| | |||| | |||  |||| ||||||||||||||| ||||||||||||| ||  ||||||||||    
T  23818924 atttgttctcataaagatcaaataggcgaggaaacctcacacatagagatgccgaccctaaccacttatcaaaccaaaacaaagtatcggaaccatcccc 23819023  T
Q  410 caacttcttagacacacactccccaaacca 439  Q
    ||||||||| ||||||||||||||||||||    
T  23819024 caacttctttgacacacactccccaaacca 23819053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 271 - 439
Target Start/End: Complemental strand, 43121492 - 43121324
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| |||||||||||  |||| |  |||||  ||||| ||||||||||  ||||||| || |  | |||||||| | |||| | |||  |||| |||||    
T  43121492 gctcaacaccaagagagcacaaactcgccactataatgaatttgttctcgtaaagatcaaataggcgaggaaacctcacacacagagatgccgaccctaa 43121393  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    |||||||||| ||||||||||||| ||  ||||||||||||||||||| ||||||||||||||||||||    
T  43121392 ccacttatcaaaccaaaacaaagtatcggaaccatcccccaacttctttgacacacactccccaaacca 43121324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 19222173 - 19222251
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtc 85  Q
    |||||| | ||||||| ||||||||| |||||||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  19222173 tccaagcaaataaagagaccttcaacagcacctggttatgccaaatcaaggatgttgcgggatccctaagaggaacgtc 19222251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 43121739 - 43121565
Alignment:
Q  24 accttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacgaacagagt 123  Q
    ||||||||||||||||| |||||| ||||||| |||| |||||||||| ||||||||   ||  | | ||||||||  ||||| ||||||||||  ||||    
T  43121739 accttcaacggcacctgattatgctaaatcaacgatgttgcaggatccgtaagaggagtatcctttgtagtcagcaaatgataggaaccacgaaatgagt 43121640  T
Q  124 aacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaag 198  Q
    | ||  ||  ||| || |||||||| |||||| |||||||||||  | | |||| ||||||||||  ||||||||    
T  43121639 acccttcagaaggctccggcaaccaaacccacttgtctgaaacattagcatgcagagaaacatcaagcaataaag 43121565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 23818647 - 23818818
Alignment:
Q  27 ttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacgaacagagtaac 126  Q
    |||||||||||||| |||||||||||||| |||| |||||||||   |||||||   ||  | | ||||||||  ||||| ||||||||||  ||||| |    
T  23818647 ttcaacggcacctgattatgccaaatcaacgatgttgcaggatctgcaagaggagtatcctttgtagtcagcaaatgataggaaccacgaattgagtacc 23818746  T
Q  127 ccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaag 198  Q
    |  ||  ||| || | |||||| ||||||||||||||||||  | | |||||||||||||||  ||||||||    
T  23818747 cttcagaaggctccgacaaccaaacccacctgtctgaaacattaacatgcaaagaaacatcaagcaataaag 23818818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 19222299 - 19222260
Alignment:
Q  124 aacccacaatagggtctggcaaccacacccacctgtctga 163  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  19222299 aaccctcaacagggtctggcaaccacacccacctgtctga 19222260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 150; Significance: 4e-79; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 1380132 - 1380321
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||    
T  1380132 tccaagcaaataaagaaaccttcaacggcacctggttatgccaaatcaaagatgttgcaggatccctcagaggaacgtctctagaagtcagcatatgata 1380231  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataa 196  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||    
T  1380232 tgaaccgcgaacagagtaacccacaataggatctggcaaccaaacccacctatctgaaacataatcttgcaaagaaacatcagtcaataa 1380321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 2999838 - 2999649
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | ||||||||||||||||||||||||   ||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  2999838 tccaagcaaataaagaaaccttcaacggcacctaactatgccagatcaaagatgatgcaggatccctaagaggaacgtctctagaggtcagcatgtgata 2999739  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataa 196  Q
    ||||||| |||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2999738 tgaaccaagaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataa 2999649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 272 - 439
Target Start/End: Original strand, 1380397 - 1380564
Alignment:
Q  272 ctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaac 371  Q
    |||||||||||||||||||||  ||||||||| || | |||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  1380397 ctctacaccaagagaaaacaaatctgccaccgaaaagaatttgttcacagagagatcgaacaacctaggaaaccgctcacaaaaagacaccgaccctaac 1380496  T
Q  372 cacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    || |||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||    
T  1380497 catttatcaaaccaaaacaaagtgtctgaaccattccccaacttcttagacacacactctccaaacca 1380564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 439
Target Start/End: Original strand, 11028191 - 11028352
Alignment:
Q  278 accaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaaccactta 377  Q
    |||||||||||||||    ||||  |||||| |||||||||| |||||| | |||| |  |||| ||| | || | |||| | |||| ||||||||||||    
T  11028191 accaagagaaaacaaattcgccattgtaatgaatttgttctcggaaagagcaaacagctgaggatacctcacaaacaaagcagccgaccctaaccactta 11028290  T
Q  378 tcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    ||| ||||||| | ||| || ||||||| |||||||||||| |||||| |||||||||||||    
T  11028291 tcaaaccaaaatagagtatcgaaaccatgccccaacttcttcgacacagactccccaaacca 11028352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 11027161 - 11027214
Alignment:
Q  18 aaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatcc 71  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  11027161 aaagaaaccttcaacggcacctgattatgtcaaatcaaagatgatgcaggatcc 11027214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 146; Significance: 9e-77; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 7 - 196
Target Start/End: Complemental strand, 4415790 - 4415601
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | ||||||||||||||||||||||||| |||||||| |||||||||| |||| |||||||||||||||||||||||||||||| ||||| |||    
T  4415790 tccaagcaaataaagaaaccttcaacggcacctgattatgccagatcaaagatgatgcatgatccctaagaggaacgtctctagaagtcaacatgtaata 4415691  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataa 196  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4415690 tgaaccacgaacagagtaacccaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataa 4415601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 279 - 439
Target Start/End: Complemental strand, 7000583 - 7000423
Alignment:
Q  279 ccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaaccacttat 378  Q
    |||||||||||||  | |||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  7000583 ccaagagaaaacagacatgccactgtaatggatttactctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccaatcctaaccacctat 7000484  T
Q  379 cataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7000483 cataccaaaaaaaagtgtctaaaccatcccccaacttcttggacacacactccccaaacca 7000423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 271 - 439
Target Start/End: Complemental strand, 20208545 - 20208377
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| ||||| |||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| |||||    
T  20208545 gctcaacaccaagagagaacaatcctgccaccgtaatagatttgttctcagcaagatcaaacaacctaggaaaccgctcacacaaagaaaccgaccctaa 20208446  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    |||||||||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||    
T  20208445 ccacttatcaaaccaaaacaaagtgtttgaaccatccccaaacttcttagacacacactccccaaacca 20208377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 7000840 - 7000663
Alignment:
Q  22 aaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacgaacaga 121  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||  | |  ||||||| | |||||||||| |||||||     
T  7000840 aaaccttcaacgacacctggttatgccaaatcaaagatgttgcaggatccctaaggggaacgtcatttgtggtcagcaagcgatatgaaccgcgaacagt 7000741  T
Q  122 gtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
    ||||||| || | ||||||||||||||||||||| ||||||||||| ||||| ||| |||||||||| ||||||||||    
T  7000740 gtaaccctcagtggggtctggcaaccacacccacttgtctgaaacagaatctagcagagaaacatcaatcaataaagc 7000663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 271 - 439
Target Start/End: Original strand, 6049535 - 6049703
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||| ||| ||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||| ||||| ||| ||||| ||||| ||    
T  6049535 gctcgacaccaaaagagaacaaacctgccaccgtaatggatttattgtcagaaagatcaaacaacctaggaaacctctcacgaaacgaaactgatccaaa 6049634  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    |||||||||||||||||||||||| ||  |||||||||  ||||||||| |||||||||||||||||||    
T  6049635 ccacttatcataccaaaacaaagtatcagaaccatcccttaacttcttaaacacacactccccaaacca 6049703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 6049290 - 6049465
Alignment:
Q  24 accttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacgaacagagt 123  Q
    |||||||||||||||||||  ||||||||||| || | ||| ||||||||||||||||||||  |   |||||||| |||||||||||| |||||||  |    
T  6049290 accttcaacggcacctggtggtgccaaatcaacgaagttgcgggatccctaagaggaacgtcctttatagtcagcaagtgatatgaaccgcgaacagtat 6049389  T
Q  124 aacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
    |||||  || ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  6049390 aacccttaacagggtctggcaaccacacccacctgtcggaaaaaaaatcttgcaaagaaacatcagtcaataaagc 6049465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 271 - 388
Target Start/End: Complemental strand, 4415526 - 4415409
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| |||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||    
T  4415526 gctcaacaccaagagagaacaagtctgccaccgtaatggatttgttctcaacaagatcgaacaacctaggaaaccgctcacacaaagaaaccgatcctaa 4415427  T
Q  371 ccacttatcataccaaaa 388  Q
    ||||||||||||||||||    
T  4415426 ccacttatcataccaaaa 4415409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 7 - 199
Target Start/End: Complemental strand, 20208809 - 20208617
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | ||||||| || ||||||||||||||| ||||| | |||||||||| |||||||||| ||||| |  | ||  | ||||||| || ||||||    
T  20208809 tccaagcaaataaagagactttcaacggcacctgggtatgcaatatcaaagatgttgcaggatccttaagatgtgcatcatttgaagtcaacaagtgata 20208710  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
     ||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||    
T  20208709 agaaccgcgaacagtgtaaccctcaacagggtctggcaaccacacccacctgtctgaaacataaacttgcagagaaacatcagtcaataaagc 20208617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 4923284 - 4923354
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaaga 77  Q
    |||||| | ||||||| |||||||||||||||||| |||||||||| ||| ||||||||||||||||||||    
T  4923284 tccaagcaaataaagagaccttcaacggcacctgggtatgccaaattaaatatgctgcaggatccctaaga 4923354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 34231749 - 34231938
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | |||||||||||||||||| ||||||||||||||| |||| |||||  ||| ||||||||||||||||||||||||||||||||||||||||    
T  34231749 tccaagcaaataaagaaaccttcaacgacacctggttatgccatatcagagatgacgcatgatccctaagaggaacgtctctagaagtcagcatgtgata 34231848  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataa 196  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  34231849 tgaaccacgaacagagtaacctaccaaagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcattcaataa 34231938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 276 - 439
Target Start/End: Original strand, 34232018 - 34232181
Alignment:
Q  276 acaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaaccact 375  Q
    ||||||||||| |||||| ||||||||| |||||| || |||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||    
T  34232018 acaccaagagagaacaagtctgccaccgaaatggacttattctcagaaagatcgaacaatctagaaaaccgctcacacaaagaaaccgatcctaaccact 34232117  T
Q  376 tatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  34232118 tatcataccaaaacaaagtgtcagaaccatcccccaacttcttagacacacactccccaaacca 34232181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 271 - 439
Target Start/End: Original strand, 4077589 - 4077757
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| ||||| |  |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||    
T  4077589 gctcaacaccaagagagaacaaacacgccaccgtaatggatttgttctcagaaagatcaaacaaccgaggaaaccgctcacaaaaaggaaccgatcctaa 4077688  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    ||||||||||||||||||||| |||||| |||||||||||||||  || ||||||| ||||||||||||    
T  4077689 ccacttatcataccaaaacaaggtgtctgaaccatcccccaactgtttcgacacactctccccaaacca 4077757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 7458752 - 7458569
Alignment:
Q  16 ataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacg 115  Q
    |||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||  | ||||||| || |||||| ||||| ||    
T  7458752 ataaagaaactttcaacggcacctgtttatgccagatcaaagaagctgcaggatccctgagaggaacgtcctttgaagtcaacaagtgataagaaccgcg 7458653  T
Q  116 aacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
    ||||| |||||||  |||||| ||||||||||||||||||||||| |||||| ||||||||| |||||||| ||| ||||||||    
T  7458652 aacagtgtaaccctgaataggatctggcaaccacacccacctgtcggaaacagaatcttgcagagaaacattagttaataaagc 7458569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 29113639 - 29113498
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | ||||||||||||||||||||||||| |||||||| |||| ||| |  ||| |||||||||||||||||| |||||||||||||| ||||||    
T  29113639 tccaagcaaataaagaaaccttcaacggcacctgtttatgccatatcagagaagacgcatgatccctaagaggaacgtgtctagaagtcagcaagtgata 29113540  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaacca 148  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  29113539 tgaaccacgaacagagtaacccaccaaagggtctggcaacca 29113498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 4077338 - 4077517
Alignment:
Q  20 agaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacgaaca 119  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||  || ||||| |||  | | ||||| || |||||| ||||| |||||     
T  4077338 agaaaccttcaacggcacctggttatgccaaattaaagatgctgcatgatccacaataggaatgtcctttgtagtcaacaagtgataagaaccgcgaact 4077437  T
Q  120 gagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
    |  || ||| ||  ||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||  |||||||||    
T  4077438 gtatagccctcagcagggtctagcaaccacacccacctgtctgacacaaaatcttgcaaagacacatcaaacaataaagc 4077517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 7458480 - 7458440
Alignment:
Q  288 aacaagcctgccaccgtaatggatttgttctcagaaagatc 328  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7458480 aacaagcctgccaccgtaatggatttgttctcagaaagatc 7458440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 271 - 439
Target Start/End: Complemental strand, 30110751 - 30110582
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcct-a 369  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |    
T  30110751 gctctacaccaagagagaacaaacctgccaccgtaatagatttgttctcagaaagatcaaacaacctaggaaacctctcacaaaaagaaaccgatcctaa 30110652  T
Q  370 accacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30110651 accacttatcataccaaaacaaagtgtctgaaccatcccccaacttcttagacacacactccccaaacca 30110582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 271 - 439
Target Start/End: Complemental strand, 10710987 - 10710819
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||    
T  10710987 gctctacactaagagagaacaaacctgccaccgtaatggatttgttctcagaaagatcaaacaacctaggaaatcgctcacaaaaagagaccgatcctaa 10710888  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||    
T  10710887 ccacttatcataccaaaacaaagtgtctgaaccattccccaacttcttagacacacactccgcaaacca 10710819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 51 - 196
Target Start/End: Original strand, 17708073 - 17708218
Alignment:
Q  51 atcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacgaacagagtaacccacaatagggtctggcaaccaca 150  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  17708073 atcaaagatgatgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacgaacagagtaacccacaaaagggtttggcaaccaca 17708172  T
Q  151 cccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataa 196  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  17708173 cccatctgtctgaaacaaaatcttgcaaagaaacatcagtcaataa 17708218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 271 - 439
Target Start/End: Original strand, 26720947 - 26721115
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| ||||| |||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| |||||    
T  26720947 gctcaacaccaagagagaacaatcctgccaccgtaatagatttgttctcagcaagatcaaacaacctaggaaaccgctcacacaaagaaaccgaccctaa 26721046  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26721047 ccacttatcaaaccaaaacaaagtgtctgaaccatcccccaacttcttagacacacactccccaaacca 26721115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 10711248 - 10711060
Alignment:
Q  10 aagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatga 109  Q
    ||||| |||||||||||||||||||||| ||||||||||| || | ||||  ||| |||||||||||||||||||| |||| ||| |||||  |||||||    
T  10711248 aagaaaataaagaaaccttcaacggcacgtggttatgccagattatagatagtgcgggatccctaagaggaacgtccctagtagttagcattggatatga 10711149  T
Q  110 accacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaag 198  Q
    ||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  10711148 accacgaacagtgtaaccctcaacagggtctggcaaccacacccacctgtctgaaacaaaatcttggaaagaaacatcagttaataaag 10711060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 271 - 437
Target Start/End: Complemental strand, 47106509 - 47106343
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| ||||| ||||||||||||||| |||| |||||||||||||| |||||||||||||||| || || ||| ||||| ||||||||    
T  47106509 gctcaacaccaagagagaacaaacctgccaccgtaatgaatttattctcagaaagatcaaacaacctaggaaacctcttacgaaacgaaactgatcctaa 47106410  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaac 437  Q
    |||||||||||||||||||||||| ||  |||||||||||||||||||| |||||||||||||||||    
T  47106409 ccacttatcataccaaaacaaagtatcggaaccatcccccaacttcttaaacacacactccccaaac 47106343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 271 - 388
Target Start/End: Original strand, 17708293 - 17708410
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17708293 gctcaacaccaagagagaacaagtctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacacaaagaaaccgatcctaa 17708392  T
Q  371 ccacttatcataccaaaa 388  Q
    ||||||||||||||||||    
T  17708393 ccacttatcataccaaaa 17708410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 30111015 - 30110829
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | ||||||||||||||||||||||||| ||||||||||||||||| | || |||||||||||| | ||| || || | |||||||||||||||    
T  30111015 tccaagcaaataaagaaaccttcaacggcacctgattatgccaaatcaaagaagttgtaggatccctaagtgaaacatcccttgtagtcagcatgtgata 30110916  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaa 193  Q
    |||||| ||||| | ||| ||| ||| ||||||||| |||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  30110915 tgaaccccgaactgtgtacccctcaaaagggtctggtaaccacacccacctatctgaaacaaaatcttgtagagaaacatcagtcaa 30110829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 47106753 - 47106579
Alignment:
Q  24 accttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacgaacagagt 123  Q
    |||||||||||||||||||  ||||||||||| || ||||| ||||||||||| ||||||||  | | |||||||| |||||||||||| |||||||  |    
T  47106753 accttcaacggcacctggtggtgccaaatcaacgaagctgcgggatccctaagtggaacgtcctttgtagtcagcaagtgatatgaaccgcgaacag--t 47106656  T
Q  124 aaccca-caatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
    |||||  ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47106655 aacccctcaacagggtctggcaaccacacccacctgtcggaaacaaaatcttgcaaagaaacatcagtcaataaagc 47106579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 26720720 - 26720903
Alignment:
Q  16 ataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacg 115  Q
    ||||||| || ||||||||||||||| |||||||||||||||||| |||||||||||||||| |  | ||  | ||||||| || |||||| ||||| ||    
T  26720720 ataaagagactttcaacggcacctgggtatgccaaatcaaagatgttgcaggatccctaagatgtgcatcatttgaagtcaacaagtgataagaaccgcg 26720819  T
Q  116 aacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
    ||||| ||||||| ||| |||||||| | |||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  26720820 aacagtgtaaccctcaacagggtctgacgaccacacccacctgtctgaaacaaaaacttgcagagaaacatcagtcaataaagc 26720903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 21335442 - 21335269
Alignment:
Q  24 accttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacgaacagagt 123  Q
    ||||||||||||||||| ||||| ||||||||||||| || |||||||  ||||||||  ||| | | ||||| || |||||| | ||| ||||| ||||    
T  21335442 accttcaacggcacctgattatgtcaaatcaaagatgttgtaggatccacaagaggaatatcttttgtagtcaacaggtgataag-accgcgaactgagt 21335344  T
Q  124 aacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaag 198  Q
    | ||  ||| ||||||  ||||||| ||||||||||||||||||  | | |||||||||||||||  ||||||||    
T  21335343 acccttcaaaagggtcctgcaaccatacccacctgtctgaaacattagcctgcaaagaaacatcaagcaataaag 21335269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 28098038 - 28097993
Alignment:
Q  20 agaaaccttcaacggcacctggttatgccaaatcaaagatgctgca 65  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||    
T  28098038 agaaaccttcaacggcacctgattatgccaaatcaaagatgatgca 28097993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 417
Target Start/End: Complemental strand, 28097765 - 28097645
Alignment:
Q  297 gccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaaccacttatcataccaaaacaaagtgt 396  Q
    ||||| |||||| |||||||||| |||||| | |||| || |||| ||| | | || |||| |  ||| ||||||||||||||| ||||||||| ||| |    
T  28097765 gccactgtaatgaatttgttctcggaaagagcaaacagcccaggatacctcactcacaaagtaggcgaccctaaccacttatcaaaccaaaacagagtat 28097666  T
Q  397 ctaaaccatcccccaacttct 417  Q
    |  ||||||||||||||||||    
T  28097665 cggaaccatcccccaacttct 28097645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 439
Target Start/End: Complemental strand, 7396443 - 7396372
Alignment:
Q  368 taaccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    |||||| ||||||||||||||||| || || || ||||| |||| |||||| |||||||| |||| ||||||    
T  7396443 taaccatttatcataccaaaacaacgtatcaaacccatctcccaccttcttcgacacacattccctaaacca 7396372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 182179 - 182371
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | |||||||||||||||||||||||||||||||||| ||||||||  |||| ||||||||||||| |||||| |||| |||||||||||||||    
T  182179 tccaagcaaataaagaaaccttcaacggcacctggttatgccagatcaaagagactgcgggatccctaagagaaacgtccctagtagtcagcatgtgata 182278  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
     ||||||||||||| ||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  182279 agaaccacgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 182371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 271 - 439
Target Start/End: Original strand, 182429 - 182597
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| ||||| ||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  182429 gctcaacaccaagagagaacaaacctgcgaccgaaatggatttgttctcagaaagatcaaacaacctaggaaaccgctcacaaaaagagaccgatcctaa 182528  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    |||||| || ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  182529 ccacttttcgtaccaaaacaacgtgtctgaaccatcccccaacttcttagacacacactccccaaacca 182597  T

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Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 23680221 - 23680404
Alignment:
Q  16 ataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacg 115  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||  | | |||||||| |||||||||||| ||    
T  23680221 ataaagaaactttcaacgacacctggttatgccaaatcaaagatgttgcaggatccctaagaggaacgtcctttgtagtcagcaggtgatatgaaccgcg 23680320  T
Q  116 aacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  23680321 aacagtgtaaccctcaacagggtctggcaaccacacccacctgtctgaaacagaatctagcaaagaaacatcagtcaataaagc 23680404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 17658890 - 17659071
Alignment:
Q  16 ataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacg 115  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| |||  | | ||||| ||   ||||||||||||     
T  17658890 ataaagaaaccttcaacgacacctggttatgccaaatcaaagatgttgcaggatccctaagaagaatgtccgttgtagtcaacaaacgatatgaaccaca 17658989  T
Q  116 aacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaa 197  Q
    ||||| ||||||| ||||||||||  ||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||    
T  17658990 aacagtgtaaccctcaatagggtcaagcaaccacacccacctgtcagaaacaaaatctagcagagaaacatcagtcaataaa 17659071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 271 - 439
Target Start/End: Original strand, 17659145 - 17659313
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| || |  |||||||| |||||| ||||||||||| |||||||  ||||||||||||||| |||||| ||||||||||| |||||    
T  17659145 gctccacaccaagagagaatagacctgccactgtaatgtatttgttctcaaaaagatcatacaacctaggaaacctctcacagaaagaaaccgaacctaa 17659244  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    |||| ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  17659245 ccacctatcaaaccaaaacaaagtatctgaaccatcccccaacttcttagacacacactccccaaacca 17659313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 45255901 - 45255736
Alignment:
Q  24 accttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacgaacagagt 123  Q
    ||||||||||||||||||| |||||||||||| || ||||| | ||||||| ||||||||||  | | |||||||| |||||| ||||| |||||||  |    
T  45255901 accttcaacggcacctggtgatgccaaatcaacgaagctgcggaatccctaggaggaacgtcctttgtagtcagcaagtgataagaaccgcgaacagtat 45255802  T
Q  124 aacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcag 189  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45255801 agccctcaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcag 45255736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 271 - 431
Target Start/End: Complemental strand, 45255655 - 45255495
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| ||||| |||||||||| ||||||||| |||||||||||||| ||||||||||| |||| ||||| ||| ||||| ||||||||    
T  45255655 gctcaacaccaagagagaacaaacctgccaccgaaatggatttattctcagaaagatcaaacaacctagggaacctctcacgaaacgaaactgatcctaa 45255556  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactcc 431  Q
    |||||||||||||||||||||||| ||  |||||||||||| ||||||| |||||||||||    
T  45255555 ccacttatcataccaaaacaaagtatcggaaccatcccccaccttcttaaacacacactcc 45255495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 271 - 387
Target Start/End: Original strand, 23680476 - 23680592
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| ||||  ||||||||   ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23680476 gctcaacaccaagagagaacagacctgccactaaaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacgaaaagaaaccgatcctaa 23680575  T
Q  371 ccacttatcataccaaa 387  Q
    |||| ||||||||||||    
T  23680576 ccacctatcataccaaa 23680592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 304 - 439
Target Start/End: Original strand, 36157502 - 36157637
Alignment:
Q  304 taatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaaccacttatcataccaaaacaaagtgtctaaacc 403  Q
    ||||| |||||||||| |||||| | ||||| | |||| ||| | |||| |||| | |||||||||||||||||||| ||||||||| ||| || |||||    
T  36157502 taatgaatttgttctcggaaagagcaaacaatcgaggatacctcacacacaaagtagccgatcctaaccacttatcaaaccaaaacagagtatcgaaacc 36157601  T
Q  404 atcccccaacttcttagacacacactccccaaacca 439  Q
    |||||||||||||||||||||| |||||||||||||    
T  36157602 atcccccaacttcttagacacagactccccaaacca 36157637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 26031551 - 26031603
Alignment:
Q  16 ataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcagga 68  Q
    ||||||| || ||||| ||||||||| |||||||||||||||||| |||||||    
T  26031551 ataaagagactttcaatggcacctgggtatgccaaatcaaagatgttgcagga 26031603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 36157220 - 36157265
Alignment:
Q  20 agaaaccttcaacggcacctggttatgccaaatcaaagatgctgca 65  Q
    ||||||||| |||| |||||| ||||||||||||||||||| ||||    
T  36157220 agaaacctttaacgacacctgattatgccaaatcaaagatgatgca 36157265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0912 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 271 - 439
Target Start/End: Complemental strand, 2699 - 2531
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| ||||| |||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| || ||||||||    
T  2699 gctcaacaccaagagagaacaaacctgccactgaaatggatttgttctcagaaacatcaaacaacctaggaaaccgctcacaaaaagagactgatcctaa 2600  T
Q  371 ccacttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaacca 439  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  2599 ccacttatcataccagaacaacgtgtctgaaccatcccccaacttcttagacacacactccccaaacca 2531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0912; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 199
Target Start/End: Complemental strand, 2799 - 2770
Alignment:
Q  170 atcttgcaaagaaacatcagtcaataaagc 199  Q
    ||||||||||||||||||||||||||||||    
T  2799 atcttgcaaagaaacatcagtcaataaagc 2770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 271 - 436
Target Start/End: Original strand, 7842 - 8011
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| || || |||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| |||||    
T  7842 gctcaacaccaagagagaaaaatcctgccaccgtaatagatttgttctcagcaagatcaaacaacctaggaaaccgctcacacaaagaaaccgaccctaa 7941  T
Q  371 ccac----ttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaa 436  Q
    ||||    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7942 ccacttaattatcaaaccaaaacaaagtgtctgaaccatcccccaacttcttagacacacactccccaaa 8011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 271 - 436
Target Start/End: Original strand, 12776 - 12945
Alignment:
Q  271 gctctacaccaagagaaaacaagcctgccaccgtaatggatttgttctcagaaagatcgaacaacctaggaaaccgctcacaaaaagaaaccgatcctaa 370  Q
    |||| ||||||||||| || || |||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| |||||    
T  12776 gctcaacaccaagagagaaaaatcctgccaccgtaatagatttgttctcagcaagatcaaacaacctaggaaaccgctcacacaaagaaaccgaccctaa 12875  T
Q  371 ccac----ttatcataccaaaacaaagtgtctaaaccatcccccaacttcttagacacacactccccaaa 436  Q
    ||||    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12876 ccacttaattatcaaaccaaaacaaagtgtctgaaccatcccccaacttcttagacacacactccccaaa 12945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 7578 - 7770
Alignment:
Q  7 tccaagaatataaagaaaccttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgata 106  Q
    |||||| | ||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||| |  | ||  | ||||||| || ||||||    
T  7578 tccaagcaaataaagagaccttcaacggcacctgggtatgccaaatcaaagatgttgcaggatccctaagatgtgcatcatttgaagtcaacaagtgata 7677  T
Q  107 tgaaccacgaacagagtaacccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
     ||||| ||||||| ||||||| ||| |||||| ||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||    
T  7678 agaaccgcgaacagtgtaaccctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataaagc 7770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 12532 - 12704
Alignment:
Q  27 ttcaacggcacctggttatgccaaatcaaagatgctgcaggatccctaagaggaacgtctctagaagtcagcatgtgatatgaaccacgaacagagtaac 126  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||| |  | ||  | ||||||| || |||||| ||||| ||||||| |||||    
T  12532 ttcaacggcacctgggtatgccaaatcaaagatgttgcaggatccctaagatgtgcatcatttgaagtcaacaagtgataagaaccgcgaacagtgtaac 12631  T
Q  127 ccacaatagggtctggcaaccacacccacctgtctgaaacaaaatcttgcaaagaaacatcagtcaataaagc 199  Q
    || ||| |||||| ||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||    
T  12632 cctcaacagggtcaggcaaccacacccacctgtctgaaacagaaacttgcagagaaacatcagtcaataaagc 12704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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