View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1470_low_32 (Length: 214)

Name: NF1470_low_32
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1470_low_32
NF1470_low_32
[»] chr2 (8 HSPs)
chr2 (1-214)||(16657118-16657331)
chr2 (1-166)||(43625815-43625977)
chr2 (1-211)||(11999751-11999961)
chr2 (1-214)||(12258182-12258395)
chr2 (39-211)||(12245045-12245217)
chr2 (1-174)||(12235083-12235256)
chr2 (3-139)||(16661595-16661731)
chr2 (1-170)||(7542624-7542793)
[»] chr7 (25 HSPs)
chr7 (1-214)||(8667773-8667986)
chr7 (1-214)||(10493975-10494188)
chr7 (1-214)||(13333057-13333270)
chr7 (1-214)||(8659717-8659930)
chr7 (1-214)||(8671231-8671444)
chr7 (1-166)||(1301866-1302031)
chr7 (5-174)||(8654844-8655013)
chr7 (1-151)||(8585307-8585457)
chr7 (1-151)||(8628949-8629099)
chr7 (1-157)||(3147683-3147839)
chr7 (8-214)||(8647231-8647434)
chr7 (13-166)||(8640162-8640312)
chr7 (111-214)||(7877444-7877547)
chr7 (1-171)||(17268336-17268506)
chr7 (1-170)||(6789910-6790079)
chr7 (111-214)||(8602328-8602431)
chr7 (1-140)||(17260669-17260808)
chr7 (121-214)||(8636064-8636157)
chr7 (115-214)||(8590992-8591091)
chr7 (119-199)||(8546001-8546081)
chr7 (14-160)||(27830489-27830635)
chr7 (111-199)||(8538405-8538493)
chr7 (119-199)||(8582069-8582149)
chr7 (120-199)||(8570680-8570759)
chr7 (119-156)||(29581560-29581597)
[»] chr4 (3 HSPs)
chr4 (1-214)||(9335492-9335705)
chr4 (1-85)||(35132929-35133013)
chr4 (3-83)||(30775737-30775817)
[»] chr8 (1 HSPs)
chr8 (1-214)||(43745201-43745414)
[»] chr1 (4 HSPs)
chr1 (3-157)||(34466396-34466550)
chr1 (1-166)||(15595441-15595604)
chr1 (5-166)||(4678163-4678324)
chr1 (1-61)||(52549121-52549181)
[»] chr5 (2 HSPs)
chr5 (1-214)||(28220305-28220518)
chr5 (1-214)||(42555545-42555758)
[»] chr6 (1 HSPs)
chr6 (1-82)||(28911068-28911149)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 16657118 - 16657331
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16657118 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 16657217  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgct 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16657218 tcaagagagccaattttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgct 16657317  T
Q  201 gttgttactgtgcc 214  Q
    ||||||||||||||    
T  16657318 gttgttactgtgcc 16657331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 43625977 - 43625815
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||   || ||| |||||||||||||||||| | |  | || |||||    
T  43625977 agtttagtgattctgttgttcaaaatgatatcatgttgtggccattcagggtcatt---ggggtggatgacaaaccaatgattattgtaaaatacaaggg 43625881  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgc 166  Q
    ||||||||  |  |||||| ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  43625880 tcaagagaagcgtttttgtcctgaggaaatatcgtctatgatcctcacaaagatgcgagaggttgc 43625815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 11999961 - 11999751
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    |||||||||||| |||||||||| |||||    | || |||||||||||||||| ||| |  || |||||||||||||| |||||| || |||| || ||    
T  11999961 agtttagtgatcttgttgttcaagatgatggattgttatggccattcaaggtcactgctgatgtcaatgacaaaccaataattactgttaagtacaaagg 11999862  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgct 200  Q
     || ||||  ||  | |||||||| ||| ||||||||||| | || || |||||||||||| |||||||||||| | | || || || || ||||||| |    
T  11999861 ccaggagaagcagctatgtgctgaagaagtatcatctatggtactaacgaagatgcgagaaattgctgaggcatatttagaatcaccggtaaagaatgtt 11999762  T
Q  201 gttgttactgt 211  Q
    |||||||||||    
T  11999761 gttgttactgt 11999751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 12258182 - 12258395
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    ||||||||||||  || |||||| ||||||| || ||||||||||| || |||| ||| || || |||| |||||| ||||||||  |  |||| |||      
T  12258182 agtttagtgatcaagtagttcaagatgatataatgttgtggccatttaaagtcactgctggtgtcaatggcaaacccatgattacggtaaagtacaagaa 12258281  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgct 200  Q
    ||||||||  ||  ||||||| |||||| |||||||| || |  | ||||||||||||||| |||||||||||| | | || || || || ||||||||     
T  12258282 tcaagagaagcagctttgtgccgaggaagtatcatctgtggtattgacaaagatgcgagaaattgctgaggcatatttagaatcacccgttaagaatgca 12258381  T
Q  201 gttgttactgtgcc 214  Q
    ||||||||||||||    
T  12258382 gttgttactgtgcc 12258395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 39 - 211
Target Start/End: Original strand, 12245045 - 12245217
Alignment:
Q  39 tggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataagggtcaagagagccacttttgtgctgaggaaatatcatcta 138  Q
    ||||| |||||||||| ||| || || |||||||||||||| |||||| || | || || || || ||||  ||  | |||||||| ||| |||||||||    
T  12245045 tggccgttcaaggtcactgctggtgtcaatgacaaaccaataattactgttaactacaaaggccaggagaagcagctatgtgctgaagaagtatcatcta 12245144  T
Q  139 tgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgctgttgttactgt 211  Q
    || | || ||||||||||||||| |||||||||||| | | || || || || ||||||||||||||||||||    
T  12245145 tggtactaacaaagatgcgagaaattgctgaggcatatttagaatcaccggtaaagaatgctgttgttactgt 12245217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 12235256 - 12235083
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    ||||||||||||  ||||||||| ||||| | || ||||||||||||||||||  ||| || || ||||||||||| ||||||| | |  |||| |||||    
T  12235256 agtttagtgatcaagttgttcaagatgatgtgatgttgtggccattcaaggtcgctgctggtgtcaatgacaaacccatgattattgtcaagtacaaggg 12235157  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcat 174  Q
    || |||||  ||  | ||| | || ||| ||||||||||| | || ||||||||||||||| | ||||||||||    
T  12235156 tcgagagaagcagctatgtcccgaagaagtatcatctatggtactcacaaagatgcgagaaatcgctgaggcat 12235083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 16661595 - 16661731
Alignment:
Q  3 tttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataagggtc 102  Q
    |||||||| || ||||||||||| |||||  | |||||||| |||||||| ||||| || || ||||||||||| | ||||| | || |||| |||||||    
T  16661595 tttagtgaccccgttgttcaaaaagatatactgttgtggccgttcaaggttattgctggtgttaatgacaaacctacgattagtgttaagtacaagggtc 16661694  T
Q  103 aagagagccacttttgtgctgaggaaatatcatctat 139  Q
    | ||||  | | ||||||| |||||||| ||||||||    
T  16661695 aggagaagctcctttgtgccgaggaaatctcatctat 16661731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 7542793 - 7542624
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    ||||||||||||||||||||||| |||||||  | || |||||||||||||| | ||| || |  ||||||| ||| ||||||||  || |||| ||||     
T  7542793 agtttagtgatcctgttgttcaagatgatatactgttatggccattcaaggtgactgcgggtgacaatgacagacccatgattaccgttaagtacaagga 7542694  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgag 170  Q
    ||| ||||  ||  |   |||||| ||  ||||||||||| | || ||||||||||||||| ||||||||    
T  7542693 tcaggagaaacaactccatgctgaagaggtatcatctatggtactcacaaagatgcgagaaattgctgag 7542624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 8e-51; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 8667986 - 8667773
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    |||||||||| || ||||||||||  |||||  | ||||||||||||||||| ||| | || || ||||||||||| ||||||||| || |||| |||||    
T  8667986 agtttagtgaccccgttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaaacctatgattactgttaagtacaaggg 8667887  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgct 200  Q
    ||||||||  ||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||| ||||||| | ||| |||||| |||||||||||     
T  8667886 tcaagagaagcacttttgtgctgaggaaatatcttctatggtgcttacaaagatgcgagaggttgcggaggcatatctggggtcgccggtcaagaatgcc 8667787  T
Q  201 gttgttactgtgcc 214  Q
    ||||||||||||||    
T  8667786 gttgttactgtgcc 8667773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 10493975 - 10494188
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    ||||||||||||| ||||||||||| ||||| || ||||||||||||||||| | | | || || ||||||||||| ||||||||   | |||| |||||    
T  10493975 agtttagtgatccggttgttcaaaacgatataatgttgtggccattcaaggttacttcaggtgtcaatgacaaacctatgattaccgctaagtacaaggg 10494074  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgct 200  Q
    ||||||||  ||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||| ||||||| | ||| ||| || ||||||||||||    
T  10494075 tcaagagaagcacttttgtgccgaggaaatatcatctatggtccttataaagatgcgagaggttgcagaggcatatttggggtcaccagtcaagaatgct 10494174  T
Q  201 gttgttactgtgcc 214  Q
    ||||||||||||||    
T  10494175 gttgttactgtgcc 10494188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 13333057 - 13333270
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    ||||||||||||| ||||||||||||||||| || ||||||||||||||||| | | | || || || ||||| || ||||||||   | |||  |||||    
T  13333057 agtttagtgatccggttgttcaaaatgatataatgttgtggccattcaaggttacttctggtgtcaacgacaagcctatgattaccgctaagtgcaaggg 13333156  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgct 200  Q
    ||||||||  ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| ||||||| ||||| ||| || |||||||||||     
T  13333157 tcaagagaagcacttttgtgccgaggaaatatcatctatggtccttacaaagatgcgagaggttgcagaggcatatatggggtcaccagtcaagaatgcc 13333256  T
Q  201 gttgttactgtgcc 214  Q
    ||||||||||||||    
T  13333257 gttgttactgtgcc 13333270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 8659930 - 8659717
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    ||||||||||| | ||||||||||| || || || ||||||||||||||||| || || || ||||| |||||||  ||||||| | ||||||| |||||    
T  8659930 agtttagtgattcagttgttcaaaaagacatgatgttgtggccattcaaggttatcgctggtgtgaacgacaaactcatgattaatgttcagtacaaggg 8659831  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgct 200  Q
    ||| ||||  ||||||||||| |||||||||||||||||| | |||||||| |||||||||||||| ||| ||| | |   ||| ||||| |||||||||    
T  8659830 tcaggagaagcacttttgtgcggaggaaatatcatctatggtacttacaaaaatgcgagaagttgcagagacatatctaatgtcacctgtgaagaatgct 8659731  T
Q  201 gttgttactgtgcc 214  Q
    |||||||| |||||    
T  8659730 gttgttacagtgcc 8659717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 8671231 - 8671444
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    ||||||||||||| ||||||||||  |||||  | ||||||||||||||||| ||| | || || ||||||||||| ||||||||| |  ||||  | ||    
T  8671231 agtttagtgatccggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaaacctatgattactgtcaagtacgaagg 8671330  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgct 200  Q
    || |||||  || |||||||||||||||||||| |||||| | ||||||||||||||||| ||||| ||||||| | ||||||| || |||||||||||     
T  8671331 tctagagaagcaattttgtgctgaggaaatatcttctatggtgcttacaaagatgcgagaggttgcggaggcatatctggagtcaccggtcaagaatgcc 8671430  T
Q  201 gttgttactgtgcc 214  Q
    |||||||| |||||    
T  8671431 gttgttaccgtgcc 8671444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 1302031 - 1301866
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    ||||||||||| | ||||||||||| || || || |||||||||||||||||||| ||||| ||||||||||||||  |||||  | || |||| |||||    
T  1302031 agtttagtgattcagttgttcaaaaagacatgatgttgtggccattcaaggtcatcgccggtgtgaatgacaaacccgtgattgttgttaagtacaaggg 1301932  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgc 166  Q
    ||| ||||  |||||||| |  |||||||||||||||||| ||||||| |||||||||||| ||||    
T  1301931 tcaggagaagcacttttgcgtggaggaaatatcatctatggtccttacgaagatgcgagaaattgc 1301866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 8655013 - 8654844
Alignment:
Q  5 tagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataagggtcaa 104  Q
    |||||||||| |||||||||| |||||||| ||||||||||||| ||| | | | || || ||||||||||| ||||||||| || |||| || ||||||    
T  8655013 tagtgatcctattgttcaaaaggatatcatgttgtggccattcatggttacttctggtgttaatgacaaacccatgattactgttaagtacaaaggtcaa 8654914  T
Q  105 gagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcat 174  Q
    ||||  || ||||||||||||||||||||||||  | | |||||||||||||||||  |||| |||||||    
T  8654913 gagaagcaattttgtgctgaggaaatatcatctgcggttcttacaaagatgcgagagattgcagaggcat 8654844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 8585307 - 8585457
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    ||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||  | || || ||||||||||| ||||||||| || |||| |||||    
T  8585307 agtttagtgatcccgttgttcaaaatgatataatgttgtggccattcaaggttatctctggtgttaatgacaaacctatgattactgttaagtacaaggg 8585406  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaa 151  Q
    |||||| |   || | ||||||||||||||||||||||| ||||| |||||    
T  8585407 tcaagaaaagaacctatgtgctgaggaaatatcatctatcatcctcacaaa 8585457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 8629099 - 8628949
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    ||||||||||||||||||||||||| |||||||| || |||||||||||||| ||| | ||  | |||||||| || |||||| || || |||| |||||    
T  8629099 agtttagtgatcctgttgttcaaaaggatatcatgttctggccattcaaggttatttctggtcttaatgacaagcctatgattgctgttaagtacaaggg 8629000  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaa 151  Q
    ||||||||   || | ||||||||||||||||||||||| |||||| ||||    
T  8628999 tcaagagaagaacctatgtgctgaggaaatatcatctattatccttgcaaa 8628949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 3147839 - 3147683
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    ||||| ||||| ||||||||||||||||||| || |||||||||||||||||||||  |||||||||||||||||| |||||| |  || |||  |||||    
T  3147839 agtttggtgattctgttgttcaaaatgatatgatgttgtggccattcaaggtcatttgcggagtgaatgacaaacccatgatttcggttaagtgcaaggg 3147740  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcg 157  Q
     || ||||  ||| | |||||||| ||||| ||||||||| | || |||||||||||    
T  3147739 acaggagaagcacctatgtgctgaagaaatctcatctatggttctaacaaagatgcg 3147683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 214
Target Start/End: Complemental strand, 8647434 - 8647231
Alignment:
Q  8 tgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataagggtcaagag 107  Q
    |||| |||||||||| |||||||  |  ||||||||||||||||||||||   | |||||||||||||| ||||||| | || | || |||||| |||||    
T  8647434 tgattctgttgttcagaatgataagaagttgtggccattcaaggtcattg---gggtgaatgacaaacccatgattattgttaaatacaagggtgaagag 8647338  T
Q  108 agccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgctgttgtta 207  Q
    |  |  | ||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||  || | |   ||| ||||| |||||||| |||||||    
T  8647337 aagcgttattgtgctgaggaaatatcatcgatgatcctcacaaagatgcgagaggttgcagagaaatatttaatgtcccctgtaaagaatgcagttgtta 8647238  T
Q  208 ctgtgcc 214  Q
    |||||||    
T  8647237 ctgtgcc 8647231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 8640162 - 8640312
Alignment:
Q  13 ctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataagggtcaagagagcca 112  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||   | |||||||||||||| | ||||| | || | || |||||| ||||||  |     
T  8640162 ctgttgttcaaaatgatatgaagttgtggccattcaaggtcattg---gggtgaatgacaaacccacgattattgttaaatacaagggtgaagagaagcg 8640258  T
Q  113 cttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgc 166  Q
     |||||||| |||||||||||||||||||||||| | ||||||||||| |||||    
T  8640259 tttttgtgccgaggaaatatcatctatgatcctttcgaagatgcgagaggttgc 8640312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 7877444 - 7877547
Alignment:
Q  111 cacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgctgttgttactg 210  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||| ||  |||| |||   ||| ||||||| |||||||||||||| ||||||||||    
T  7877444 cacttttgtgccgaggaaatatcatccatgatccttacaaagatgcgcgagattgcagagaagtttttggagtcacctgtcaagaatgcagttgttactg 7877543  T
Q  211 tgcc 214  Q
    ||||    
T  7877544 tgcc 7877547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 17268506 - 17268336
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    |||||||||||||||| || ||||| ||||| || | ||||||||||||||||||||| |   |||||||||||||||||||| | ||  |||| |||||    
T  17268506 agtttagtgatcctgtggtccaaaaagatataatgtcgtggccattcaaggtcattgcggatatgaatgacaaaccaatgatttccctcaagtacaaggg 17268407  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgagg 171  Q
     |  ||||  ||||||||||| |||||||| || |||||| | || ||||||||||| ||  |||||||||    
T  17268406 acgggagaaacacttttgtgcagaggaaatttcgtctatggtactcacaaagatgcgggagattgctgagg 17268336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 6790079 - 6789910
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    ||||||||||| ||||||||||||||||||| || || |||||||||||||||||||| || || |||||||| || ||||||  | || ||||||||||    
T  6790079 agtttagtgattctgttgttcaaaatgatatgatgttttggccattcaaggtcattgctggcgtcaatgacaagcccatgattgttgttgagtataaggg 6789980  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgag 170  Q
    | | ||||  ||  | |||| ||||||| | || ||||||||||| || |||||||| ||  ||||||||    
T  6789979 tgaggagaagcaactatgtgttgaggaagtttcgtctatgatcctcaccaagatgcgggagattgctgag 6789910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 8602431 - 8602328
Alignment:
Q  111 cacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgctgttgttactg 210  Q
    ||||| |||||||||||||| ||||| ||| |||||||||||||||| ||| |||| |||   ||| ||||||| |||||||||||||| ||||||||||    
T  8602431 cacttctgtgctgaggaaatctcatcaatggtccttacaaagatgcgtgaaattgcagagaagtttctggagtcacctgtcaagaatgcagttgttactg 8602332  T
Q  211 tgcc 214  Q
    ||||    
T  8602331 tgcc 8602328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 17260808 - 17260669
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    |||||||||||||||| || ||||| ||||| || | ||||||||||||||||||||| |   |||||||||||||||||||| | ||  |||| |||||    
T  17260808 agtttagtgatcctgtggtccaaaaagatataatgtcgtggccattcaaggtcattgcggatatgaatgacaaaccaatgatttccctcaagtacaaggg 17260709  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatg 140  Q
     |  ||||  ||||||||||| |||||||| || ||||||    
T  17260708 acgggagaaacacttttgtgcagaggaaatctcgtctatg 17260669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 8636064 - 8636157
Alignment:
Q  121 ctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgctgttgttactgtgcc 214  Q
    ||||||||||||| |||||| |||| ||||||||||||||  |||||||||||| | |||| ||  ||||||||||||| ||  ||||||||||    
T  8636064 ctgaggaaatatcgtctatggtcctgacaaagatgcgagagattgctgaggcatatctggaatcatctgtcaagaatgcagtcattactgtgcc 8636157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 8591091 - 8590992
Alignment:
Q  115 tttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgctgttgttactgtgcc 214  Q
    ||||||| |||||||| ||||| ||| | || ||||||||||||||  |||||||    ||| ||||||| |||||||||||||| ||||||||||||||    
T  8591091 tttgtgcggaggaaatctcatccatggttctcacaaagatgcgagagattgctgaaaagtttttggagtcacctgtcaagaatgcagttgttactgtgcc 8590992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 8546081 - 8546001
Alignment:
Q  119 tgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgc 199  Q
    |||||| |||||||||||| |||||||  || ||||||||||  |||| ||||||||| ||||||| ||||| ||||||||    
T  8546081 tgctgaagaaatatcatctgtgatcctctcacagatgcgagagattgcagaggcatttttggagtcacctgttaagaatgc 8546001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 27830489 - 27830635
Alignment:
Q  14 tgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataagggtcaagagagccac 113  Q
    |||||||||||| ||||| | |||||||| |||||| |||||| | |  || ||  ||||||| ||| ||  | || |||| ||| |||| ||||  |||    
T  27830489 tgttgttcaaaaagatataaacttgtggctattcaaagtcattactgatgtaaacaacaaacccatgtttgttgttaagtacaagagtcaggagaaacac 27830588  T
Q  114 ttttgtgctgaggaaatatcatctatgatccttacaaagatgcgaga 160  Q
    || ||||| |||||||| ||||| ||| |||||||||||||||||||    
T  27830589 ttatgtgcggaggaaatttcatcaatggtccttacaaagatgcgaga 27830635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 8538493 - 8538405
Alignment:
Q  111 cacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgc 199  Q
    ||||||| |||||| ||||||||| ||||| |||| ||||||||||| ||  | ||||| | |||| ||||||| |||||||| |||||    
T  8538493 cacttttttgctgaagaaatatcagctatggtcctcacaaagatgcgggagttcgctgaagtatttttggagtcacctgtcaaaaatgc 8538405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 8582149 - 8582069
Alignment:
Q  119 tgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgc 199  Q
    |||||| |||||||||||| | || || ||| ||||||||||  |||| ||||||||| ||||||| ||||| ||||||||    
T  8582149 tgctgaagaaatatcatctgttattctgacacagatgcgagagattgcagaggcatttttggagtcacctgttaagaatgc 8582069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 8570759 - 8570680
Alignment:
Q  120 gctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgc 199  Q
    ||||| |||||||||||| |||| ||  |||||||||||||  |||| || |||||| ||||||| ||||| ||||||||    
T  8570759 gctgaagaaatatcatctgtgattctctcaaagatgcgagagattgcagaagcatttttggagtctcctgttaagaatgc 8570680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 29581560 - 29581597
Alignment:
Q  119 tgctgaggaaatatcatctatgatccttacaaagatgc 156  Q
    |||||||||||||||||||||||||||  |||||||||    
T  29581560 tgctgaggaaatatcatctatgatcctctcaaagatgc 29581597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 9335492 - 9335705
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    ||||||||||||  ||||||||||  |||||  | ||||||||||||||||| ||| | || || ||||||||||| ||||||||| || | || |||||    
T  9335492 agtttagtgatctggttgttcaaagagatatattgttgtggccattcaaggttatttctggtgttaatgacaaacctatgattactgttaactacaaggg 9335591  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgct 200  Q
    ||||||||  ||||||||||||||||||||||| |||||| | |||||||||||| |||| ||||| ||||||| | ||| |||||| |||||||||||     
T  9335592 tcaagagaagcacttttgtgctgaggaaatatcttctatgttgcttacaaagatgagagaggttgcggaggcatatttggggtcgccggtcaagaatgcc 9335691  T
Q  201 gttgttactgtgcc 214  Q
    |||||||| |||||    
T  9335692 gttgttaccgtgcc 9335705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 35133013 - 35132929
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattac 85  Q
    |||||||||||||| |||||||| |||||||  |  | |||||||||||||||| |||||| || ||||||||||| ||||||||    
T  35133013 agtttagtgatcctattgttcaagatgatatactgctatggccattcaaggtcactgccggtgtaaatgacaaacccatgattac 35132929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 30775817 - 30775737
Alignment:
Q  3 tttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgatt 83  Q
    ||||| || |||||||||||||| |||||  | |||||||||||||||||  || | || || ||||||||||| ||||||    
T  30775817 tttagcgaccctgttgttcaaaaagatattttgttgtggccattcaaggttgtttctggtgttaatgacaaacccatgatt 30775737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 43745414 - 43745201
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    |||||| |||| ||| ||||||||||||||| |  |||||||| |||||||||||| ||||| |||||||||||||  ||||| || || |||| |||||    
T  43745414 agtttaatgattctgatgttcaaaatgatatgaagttgtggccgttcaaggtcatttccggattgaatgacaaacccgtgatttctgttaagtacaaggg 43745315  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgct 200  Q
     || ||||  ||| | ||||| || ||||| ||||||||||| || ||||||||||| ||  |||| ||| ||||| || | | |||||||||||||||     
T  43745314 acaggagaagcacctatgtgccgaagaaatctcatctatgattctaacaaagatgcgtgagattgcagagacatttttgcaattgcctgtcaagaatgca 43745215  T
Q  201 gttgttactgtgcc 214  Q
    ||||||||||||||    
T  43745214 gttgttactgtgcc 43745201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 3 - 157
Target Start/End: Original strand, 34466396 - 34466550
Alignment:
Q  3 tttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataagggtc 102  Q
    ||||||||||||| ||||||||  ||||| || || ||||||||||| || ||||| || || |||||||| ||||||||| | ||| ||||||||||||    
T  34466396 tttagtgatcctgatgttcaaacagatatgatgttatggccattcaaagttattgctggtgttaatgacaagccaatgatttcccttaagtataagggtc 34466495  T
Q  103 aagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcg 157  Q
    | ||||  ||| | |||||||||||||| ||||||||||||||| ||||||||||    
T  34466496 aggagaagcacctatgtgctgaggaaatctcatctatgatcctttcaaagatgcg 34466550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 15595604 - 15595441
Alignment:
Q  1 agtttagtgatcctgtt-gttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataagg 99  Q
    ||||||||||| ||||| |||||||||||||| |  ||||||||||||||||||||||   | |||||||||||||| ||||||| | || | || ||||    
T  15595604 agtttagtgattctgtttgttcaaaatgatataaagttgtggccattcaaggtcattg---gtgtgaatgacaaacccatgattattgttaaatacaagg 15595508  T
Q  100 gtcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgc 166  Q
    ||||||| |  | ||||||||||||||||||||| |||||||| || | |||||||||||| |||||    
T  15595507 gtcaagaaaagcgcttttgtgctgaggaaatatcgtctatgattctcaaaaagatgcgagaggttgc 15595441  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 166
Target Start/End: Original strand, 4678163 - 4678324
Alignment:
Q  5 tagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataagggtcaa 104  Q
    ||||||| ||||||||||||| || ||||| ||||||||||| | ||||||  | || | |||||| ||||| ||||||| | || |||| |||||||||    
T  4678163 tagtgattctgttgttcaaaaagacatcatgttgtggccatttagggtcatcactggtgagaatgataaaccgatgattagtgttaagtacaagggtcaa 4678262  T
Q  105 gagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgc 166  Q
    ||||  ||  || ||| ||||||||||||||| |||||||||||||||||| ||||||||||    
T  4678263 gagaagcaagttagtgttgaggaaatatcatcgatgatccttacaaagatgagagaagttgc 4678324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 52549121 - 52549181
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccgg 61  Q
    ||||||||||||||||||||||| |||||||  | || ||| |||||||||||| ||||||    
T  52549121 agtttagtgatcctgttgttcaagatgatatattgttatggtcattcaaggtcactgccgg 52549181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 28220518 - 28220305
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    ||||||||||  ||||||||||| ||||||| |  ||||||||||||||||||||| |||||  ||| |||||||| |||||| || || |||| |||||    
T  28220518 agtttagtgactctgttgttcaagatgatataaagttgtggccattcaaggtcatttccggaacgaacgacaaacccatgatttctgttaagtacaaggg 28220419  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgct 200  Q
     || ||||  ||| | ||||| || ||||| ||||||||| | || ||||||||||| ||  |||| ||||| ||| |||| |  ||||||||||||||     
T  28220418 acaggagaagcacctatgtgccgaagaaatctcatctatggttctaacaaagatgcgtgagattgcagaggcctttttggaatttcctgtcaagaatgca 28220319  T
Q  201 gttgttactgtgcc 214  Q
    ||| ||||||||||    
T  28220318 gttattactgtgcc 28220305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 42555545 - 42555758
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgattactcttcagtataaggg 100  Q
    |||||| ||||  ||||||||||||||| || |  ||||||||||||||||||||| ||||| | |||| ||| || ||||||  | |   |||  ||||    
T  42555545 agtttaatgattatgttgttcaaaatgacatgaagttgtggccattcaaggtcatttccggaataaatggcaagcccatgatttatgtaacgtacgaggg 42555644  T
Q  101 tcaagagagccacttttgtgctgaggaaatatcatctatgatccttacaaagatgcgagaagttgctgaggcatttatggagtcgcctgtcaagaatgct 200  Q
     || ||||  ||| | || || || ||||| ||||||||||| || |||||||||||  |  |||| ||||||||| ||||   |||||||||||||||     
T  42555645 acaggagaaacacctatgcgccgaagaaatctcatctatgattctaacaaagatgcgcaagattgcagaggcatttttggaaatgcctgtcaagaatgca 42555744  T
Q  201 gttgttactgtgcc 214  Q
    ||||||||||||||    
T  42555745 gttgttactgtgcc 42555758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 28911149 - 28911068
Alignment:
Q  1 agtttagtgatcctgttgttcaaaatgatatcatcttgtggccattcaaggtcattgccggagtgaatgacaaaccaatgat 82  Q
    ||||||||||||| ||||||||||| |||   || |||| ||| ||||||||||||||||| || |||||||| || |||||    
T  28911149 agtttagtgatcccgttgttcaaaacgattcaatgttgtcgccgttcaaggtcattgccggtgtcaatgacaaccccatgat 28911068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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