View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1470_low_4 (Length: 424)
Name: NF1470_low_4
Description: NF1470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1470_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 38109 - 38520
Alignment:
| Q |
1 |
cattgtgttgagtcttgttaagagtctaaatgtctgagaaatatcaagagagaacatgggtgtcattgtgtgagtgagttttgtcttcaagtatcgtggt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38109 |
cattgtgttgagtcttgttaagagtctaaatgtctgagaaatatcaatagagaacatgagtgtcattgtgtgagtgagttttgtcttcaaatatcgtggt |
38208 |
T |
|
| Q |
101 |
gaactatttatatgcctaattatatgatcaacaatatgtccttaaatgctaatatatgataactattcaataccaatatatgtgttgatatgtctctaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38209 |
gaactatttatatgcctaattatatgatcaacaatatgttcttaaatgctaatatatgataactattcaataccgatatatgtgttgatatgtctctaag |
38308 |
T |
|
| Q |
201 |
tatgtgtttaatgtttatacttgttactattgaaatcatgtgaatatatgtgttgttctgtttacttatgttctacctttcatggttttcggttacacat |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38309 |
tatgtgtttaatgtttatacttgttcctattgaaatcatgtgaatatatgtgttgttctgtttacttatgttctacctttcatggttttcggttacacat |
38408 |
T |
|
| Q |
301 |
cattcattgcttttgtgtgtttgtgaatattgcgtttttagataaactgagtttcattgagttgaagcttcaatggttttgttttatgtgtcatgtacac |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38409 |
cattcattgcttttgtgtgtttgtgaatattgcgtttttagataaactgagtttcattgagttgaagcttcaatgtttttgttttatgtgtcatgtacac |
38508 |
T |
|
| Q |
401 |
tttaacttgatg |
412 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38509 |
tttaacttgatg |
38520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University