View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14710_high_3 (Length: 254)
Name: NF14710_high_3
Description: NF14710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14710_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 36829832 - 36829604
Alignment:
| Q |
14 |
ttattctccatcgctgccatatacaccgcatgagcttctttcaccttctcacccttacacaaccaagacaacattctaccaattttctcaccatcaggaa |
113 |
Q |
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| T |
36829832 |
ttattctccatcgctgccatatacaccgcatgagcttctttcaccttctcacccttacacaaccaagacaacattctaccaattttctcaccatcaggaa |
36829733 |
T |
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| Q |
114 |
tcctctgtgcatcaatcatcttctgacacacagaacacgccaaatcaaaatctaatctcctacaaagaccttcaatcgtaaagtaataactctctgcatc |
213 |
Q |
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| T |
36829732 |
tcctctgtgcatcaatcatcttctgacacacagaacacgccaaatcaaaatctaatctcctacaaagaccttcaatcgtaaagtaataactctctgcatc |
36829633 |
T |
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| Q |
214 |
cggtacacactgaaacccatgaaatttct |
242 |
Q |
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| T |
36829632 |
cggtacacactgaaacccatcaaatttct |
36829604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 50227863 - 50227942
Alignment:
| Q |
69 |
tacacaaccaagacaacattctaccaattttctcaccatcaggaatcctctgtgcatcaatcatcttctgacacacagaaca |
150 |
Q |
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||||||||||||||| |||||||| ||||| || |||||||||| |||||||| |||| ||||||||||| |||||||| |
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| T |
50227863 |
tacacaaccaagacattattctacccattttttcgccatcaggaa--gtctgtgcagcaataatcttctgacaaacagaaca |
50227942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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