View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14710_low_2 (Length: 364)
Name: NF14710_low_2
Description: NF14710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14710_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 70 - 343
Target Start/End: Original strand, 27513030 - 27513303
Alignment:
| Q |
70 |
aggagggatagttgcttactactctggataagttggtttctggattgaagattcattttactagaaataacgtcattggtctgaatttggagaaagattc |
169 |
Q |
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| T |
27513030 |
aggagggatagttgcttactactctggataagttggtttctggattgaagattcattttactagaaataacgtcattggtctgaatttggagaaagattc |
27513129 |
T |
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| Q |
170 |
ataacgactattcccagttcttctttcttgttcaattagagatttacaattcggtaatgcttagtatagtgaaatccaaaatcacgacaatattcccaag |
269 |
Q |
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| T |
27513130 |
ataacgactattcccagttcttctttcttgttcaattagagatttacaattcggtaatgcttagtatagtgaaatccaaaatcacgacaatattcccaag |
27513229 |
T |
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| Q |
270 |
tgtacataagtgctactgaattgaaagtttgacttcaatacacccattactccgtgatttccggccataacaca |
343 |
Q |
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| T |
27513230 |
tgtacataagtgctactgaattgaaagtttgacttcaatacacccattactccgtgatttccagccataacaca |
27513303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 221 - 345
Target Start/End: Original strand, 36303569 - 36303693
Alignment:
| Q |
221 |
cggtaatgcttagtatagtgaaatccaaaatcacgacaatattcccaagtgtacataagtgctactgaattgaaagtttgacttcaatacacccattact |
320 |
Q |
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| T |
36303569 |
cggtaatgcttagtacagcgatatccaaaaccacgacactatatgaaagtgtacataagtgctattgaattgaaagtttgacttcaaaacacccatgatt |
36303668 |
T |
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| Q |
321 |
ccgtgatttccggccataacacaat |
345 |
Q |
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| T |
36303669 |
ctgtgatttccggccaaaatacaat |
36303693 |
T |
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