View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14710_low_3 (Length: 284)
Name: NF14710_low_3
Description: NF14710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14710_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 34397547 - 34397809
Alignment:
| Q |
18 |
gtaagtactcacatggtttaattaacactatgcttgtacgattaaaaattaacacgaaaa-aatgtaatttacttgtaattgaaatatttatgacacatg |
116 |
Q |
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| T |
34397547 |
gtaagtactcacatggtttaattaacactatgcttgtacgattaaaaattaacacgaaaaaaatgtaatttacttgtaattgaaatatttatgacacatg |
34397646 |
T |
|
| Q |
117 |
cgaaagacctgcttgctatgaagtactgacatggatgctcagacattaacactgataatatttcaaaaattgaatgtaaatacatgtgtcagtattgtgt |
216 |
Q |
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| T |
34397647 |
cgaaagacctgcttgctatgaagtactgacatggatgctcagacattaacactgataatatttcaaaaattgaatgtaaatacatgtgtcagtattgtgt |
34397746 |
T |
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| Q |
217 |
ctcgttgtcgactatgtcacattctaaacactggatacgtctttaatctgagttatctgtgct |
279 |
Q |
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| T |
34397747 |
ttcgttgtcgactatgtcacattctaaacactggatacgtctttaatctgagttatctgtgct |
34397809 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 40584004 - 40583972
Alignment:
| Q |
185 |
attgaatgtaaatacatgtgtcagtattgtgtc |
217 |
Q |
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| T |
40584004 |
attgaatgtaaacacatgtgtcagtattgtgtc |
40583972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 40876374 - 40876338
Alignment:
| Q |
182 |
aaaattgaatgtaaat-acatgtgtcagtattgtgtc |
217 |
Q |
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| T |
40876374 |
aaaattgaatgtaaatcacatgtgtcagtattgtgtc |
40876338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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