View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14711_high_10 (Length: 368)
Name: NF14711_high_10
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14711_high_10 |
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| [»] scaffold0065 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 7161825 - 7161487
Alignment:
| Q |
17 |
catgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtctgtaagttggctagacgagacattcttttgggca |
116 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7161825 |
catgttgcacttgtttgtgtctcacattcttcaagtaagagggggcactcggtgatttctagggtctgtaagttggccagacgagacattcttttgggca |
7161726 |
T |
|
| Q |
117 |
gcgaatccaaattttga--gtctttaatggtgatatgtagaagtgacgagaggttgcaaatccactccggcaatgactttagatcggaacaatatgaaac |
214 |
Q |
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| T |
7161725 |
gtgaagccaaattttgacagtctttaatggtgatatgctgaagtgacgagaggttgcaaatccaatccggcaatgactttagatcggaacaatatgaaac |
7161626 |
T |
|
| Q |
215 |
ttcgatcaatattttgcaaggaaggaagatagttgaggtcgtccttaaaccaaatttcaatttcctgaaatgttcgacttggaagcttcataaaaacaag |
314 |
Q |
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||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7161625 |
ttc----aatattttgcaaggatggaagatagtttaggtcgtccttaaaccaaatttcaatttcctgaaatgttcgacttggaagcttcataaaaacaag |
7161530 |
T |
|
| Q |
315 |
atgctcgagagaagtcagattttgcacccaatccttcgggtat |
357 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
7161529 |
atgctcgagggaagtcagattttgcacccaatccttcaggtat |
7161487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 3916910 - 3917237
Alignment:
| Q |
17 |
catgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtctgtaagttggctagacgagacattcttttgggca |
116 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||| || | ||||||||||||||||||| ||||| ||||| | ||||| || ||||| |
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| T |
3916910 |
catgttgcacttgtttgtgtctcacattcttcaattaagaggggacatcgaatgatttctagggtctgtaatttggcaagacgtggcattccttcgggca |
3917009 |
T |
|
| Q |
117 |
gcgaatccaaattt-tg-agtctttaatggtgatatgtagaagtgacgagaggttgcaaatccactccggcaatgactttagatcggaacaatatgaaac |
214 |
Q |
| |
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|||||||||||||| || ||||| |||||| ||||| ||||||| |||| |||| ||||||| || ||||||| | ||||||| ||||||| ||| |
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| T |
3917010 |
gcgaatccaaatttatgcagtctgcaatggttatatgctgaagtgaggagatgttgaaaatccaatcaggcaatgccattagatctgaacaatgccaaaa |
3917109 |
T |
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| Q |
215 |
ttcgatcaatattttgcaaggaaggaagatagttgaggtcgtccttaaaccaaatttcaatttcctgaaatgttcgacttggaagcttcataaaaacaag |
314 |
Q |
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| | ||| ||||||| ||||||||||||| ||| || ||||||||||||||| |||||||||||||||| || ||||||||||||||||| ||| |
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| T |
3917110 |
t----ttaattttttgcagggaaggaagatagctgatctcttccttaaaccaaattccaatttcctgaaatgtctgatttggaagcttcataaaactaag |
3917205 |
T |
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| Q |
315 |
atgctcgagagaagtcagattttgcacccaat |
346 |
Q |
| |
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|||||| ||||||| |||||| ||||||||| |
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| T |
3917206 |
atgctcaagagaagatagatttcgcacccaat |
3917237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 9e-55; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 20 - 346
Target Start/End: Original strand, 3171573 - 3171897
Alignment:
| Q |
20 |
gttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtctgtaagttggctagacgagacattcttttgggcagcg |
119 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| || || |||||| ||| ||||||||||||||| ||||| ||| | | ||||||| |||||||| |
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| T |
3171573 |
gttgcacttgtttgtgtctcacattcttcaagtaaaagaggacaatcaatgacttctagggtctgtaatttggcaagatggggcattcttccgggcagcg |
3171672 |
T |
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| Q |
120 |
aatccaaattttga--gtctttaatggtgatatgtagaagtgacgagaggttgcaaatccactccggcaatgactttagatcggaacaatatgaaacttc |
217 |
Q |
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|| ||||||||| | || | ||||||||||| ||||||||||||||||||||||||| || ||||||| |||||||| ||||||| ||| || |
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| T |
3171673 |
aagccaaattttcacagtactcgatggtgatatgctgaagtgacgagaggttgcaaatccagtctggcaatgcctttagatacgaacaattgcaaaattt |
3171772 |
T |
|
| Q |
218 |
gatcaatattttgcaaggaaggaagatagttgaggtcgtccttaaaccaaatttcaatttcctgaaatgttcgacttggaagcttcataaaaacaagatg |
317 |
Q |
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|
||||||| |||||||||||||||||||||| ||||||| ||| |||||| ||||||||||||||| |||||||||| | |||||| ||||| |
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| T |
3171773 |
----aatatttcgcaaggaaggaagatagttgagatcgtcctgaaatgaaatttggatttcctgaaatgtttgacttggaagatgaccaaaaactagatg |
3171868 |
T |
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| Q |
318 |
ctcgagagaagtcagattttgcacccaat |
346 |
Q |
| |
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|| ||||||||||||||||||| ||||| |
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| T |
3171869 |
cttcagagaagtcagattttgcatccaat |
3171897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 3168082 - 3168274
Alignment:
| Q |
17 |
catgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtctgtaagttggctagacgagacattcttttgggca |
116 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| ||||||||| || || |||||| ||||| ||||| |||| ||||| | ||||| || ||||| |
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| T |
3168082 |
catgttgcacttgtttgtgtcacacattcttcaactaagaggggacatccaaagatttccagggtatgtaatttggaaagacggggcattccttcgggca |
3168181 |
T |
|
| Q |
117 |
gcgaatccaaattttga-gtct-ttaatggtgatatgtagaagtgacgagaggttgcaaatccactccggcaatgactttagatcggaacaat |
207 |
Q |
| |
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||||| ||||||| || ||| | |||| ||||||| ||||||| ||||| ||||||||||| || |||||| ||||||||| ||||||| |
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| T |
3168182 |
gcgaagccaaattacgacatctctgaatgctgatatgctgaagtgaggagagattgcaaatccaatctggcaatacctttagatctgaacaat |
3168274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 3139937 - 3140047
Alignment:
| Q |
17 |
catgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtctgtaagttggctagacgagacattcttttgggca |
116 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| ||| || ||||||| |||| |||||||||||| ||||| || |||| ||||| || ||||| |
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| T |
3139937 |
catgttgcacttgtttgtgtctcacattcttcaattaaatcaggacaatcagcaatttgtagggtctgtaatttggcaaggcgaggcattccttcgggca |
3140036 |
T |
|
| Q |
117 |
gcgaatccaaa |
127 |
Q |
| |
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||||| ||||| |
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| T |
3140037 |
gcgaagccaaa |
3140047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 3280478 - 3280529
Alignment:
| Q |
235 |
gaaggaagatagttgaggtcgtccttaaaccaaatttcaatttcctgaaatg |
286 |
Q |
| |
|
||||||||| | || ||||| |||||||||||| |||||||||||||||||| |
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| T |
3280478 |
gaaggaagacacttcaggtcatccttaaaccaagtttcaatttcctgaaatg |
3280529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 350
Target Start/End: Complemental strand, 47669 - 47549
Alignment:
| Q |
230 |
gcaaggaaggaagatagttgaggtcgtccttaaaccaaatttcaatttcctgaaatgttcgacttggaagcttcataaaaacaagatgctcgagagaagt |
329 |
Q |
| |
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|||||||||| ||||||||| |||| ||| ||||||| |||||||||||||||||| | || |||||||| ||| ||| ||| || |||||||| |
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| T |
47669 |
gcaaggaagggagatagttggggtcttccacaaaccaattttcaatttcctgaaatgattgatttggaagcgagtacaaaccaatatgatcaagagaagt |
47570 |
T |
|
| Q |
330 |
cagattttgcacccaatcctt |
350 |
Q |
| |
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|| |||||||||||||||||| |
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| T |
47569 |
caaattttgcacccaatcctt |
47549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 47876 - 47773
Alignment:
| Q |
18 |
atgttgcacttgtttgtgtctcaaattcttcaagtaagagggggcaatcagtgatttctagggtctgtaagttggctagacgagacattcttttgggcag |
117 |
Q |
| |
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||||||||||||||||||||||| | ||| ||| ||||| | | || | | ||||||||||||||||||| |||| || | || ||||| || |||||| |
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| T |
47876 |
atgttgcacttgtttgtgtctcacactctgcaaataagaagcgacatttaatgatttctagggtctgtaatttggaaaggcaaggcattccttcgggcag |
47777 |
T |
|
| Q |
118 |
cgaa |
121 |
Q |
| |
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|||| |
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|
| T |
47776 |
cgaa |
47773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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