View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14711_high_11 (Length: 344)
Name: NF14711_high_11
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14711_high_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 44 - 338
Target Start/End: Original strand, 326024 - 326318
Alignment:
| Q |
44 |
gtagttatagaaaatgaggacaaggctaagttttttatggtgtgtttggatttacctttgtgggtcatgtatgggaagatttgtggtagnnnnnnncaat |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
326024 |
gtagttatagaaaatgaggacaaggctaagttttttatggtgtgtttggatttacctttgtgggtcatgtatgggaagatttgtggtagaaaaaaacaat |
326123 |
T |
|
| Q |
144 |
ttgaaaataacttctccaaaatcattgagaggtatatatgaatgtgcaattggaaattttggggtcccaaaatatggaggaacaatgattggaacagttg |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
326124 |
ttgaaaataacttctccaaaatcattgagaggtatatatgaatgtgcaattggaaattttggggtcccaaaatatggaggaacaatgattggaacagttg |
326223 |
T |
|
| Q |
244 |
tgtatccaaaacttaataagaatggttgcaccaaatttaatgatgcagatacttccttgaattccaagccaggaagcttccctacatttgttctt |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
326224 |
tgtatccaaaacttaataagaatggttgcaccaaatttaatgatgcagatacttccttgaattccaagccaggaagcttccctacatttgttctt |
326318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 27415139 - 27415032
Alignment:
| Q |
143 |
tttgaaaataacttctccaaaatcattgagaggtatatatgaatgtgcaattggaaattttggggtcccaaaatatggaggaacaatgattggaacagtt |
242 |
Q |
| |
|
||||| ||| |||||||||||||| |||| |||| ||||||||||| ||||||||||||||||| || | ||||| |||||| || |||| | ||| |
|
|
| T |
27415139 |
tttgagaatcacttctccaaaatcgttgaagggtagttatgaatgtgccattggaaattttggggtgcctcagtatggtggaacattggttggttctgtt |
27415040 |
T |
|
| Q |
243 |
gtgtatcc |
250 |
Q |
| |
|
|||||||| |
|
|
| T |
27415039 |
gtgtatcc |
27415032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University