View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14711_high_17 (Length: 274)
Name: NF14711_high_17
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14711_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 42916622 - 42916384
Alignment:
| Q |
20 |
atcatcaggcacaactccagaaagattattattgctcaaatcaagaaccctaaggttatcaatagtagcaatatttgcatttatactcccagtaagatta |
119 |
Q |
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| T |
42916622 |
atcatcaggcacaactccagaaagattattattgctcaaatcaagaaccctaaggttatcaatagtagcaatatttgcatttatactcccagtaagatta |
42916523 |
T |
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| Q |
120 |
ttattccccaaataaagccgacgaagaaactgcaaccgttgcaacccacgaccaattcttccagataaagaaaacccattaagattaacctccacaactc |
219 |
Q |
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| T |
42916522 |
ttattccccaaataaagccgacgaagaaactgcaaccgttgcaacccacgaccaattcttccggataaagaaaacccattaagattaacctccacaactc |
42916423 |
T |
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| Q |
220 |
tattagatctagggttacatttcacaccaacccaactac |
258 |
Q |
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| T |
42916422 |
tattagatctagggttacatttcacaccaacccaactac |
42916384 |
T |
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