View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14711_high_26 (Length: 226)

Name: NF14711_high_26
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14711_high_26
NF14711_high_26
[»] chr2 (3 HSPs)
chr2 (1-163)||(43104049-43104213)
chr2 (161-226)||(43104244-43104313)
chr2 (6-60)||(43107280-43107334)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 43104049 - 43104213
Alignment:
Q  1 tccacttccatctcctaagtagatgattttcttctttccttcatcatcaagtgaattttgaaacatttccatcacctttccctgtttgtcattcgagggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43104049 tccacttccatctcctaagtagatgattttcttctttccttcatcatcaagtgaattttgaaacatttccatcacctttccctgtttgtcattcgagggg 43104148  T
Q  101 gagaaatgtgtcaatagaaag--nnnnnnnnttacaaatatctatatgataagatgtgattttat 163  Q
    |||||||||||||||||||||          ||||||||||||||||||||||||||||||||||    
T  43104149 gagaaatgtgtcaatagaaagaaaaaaaaaattacaaatatctatatgataagatgtgattttat 43104213  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 43104244 - 43104313
Alignment:
Q  161 tatatttttattttataaagttaaaa----gtatattaactcaatatagaagctgctctagctctacata 226  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||    
T  43104244 tatatttttattttataaagttaaaacaaagtatattaactcaatatagaagctgctctagctctacata 43104313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 43107280 - 43107334
Alignment:
Q  6 ttccatctcctaagtagatgattttcttctttccttcatcatcaagtgaattttg 60  Q
    |||||||| ||| |||||||| |||||||||||||||||||||||||||||||||    
T  43107280 ttccatcttctaggtagatgaatttcttctttccttcatcatcaagtgaattttg 43107334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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