View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14711_high_4 (Length: 488)

Name: NF14711_high_4
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14711_high_4
NF14711_high_4
[»] chr1 (7 HSPs)
chr1 (18-128)||(50593607-50593717)
chr1 (378-463)||(32887740-32887825)
chr1 (24-104)||(1896773-1896853)
chr1 (379-450)||(39426241-39426313)
chr1 (384-465)||(35534741-35534821)
chr1 (390-449)||(26860024-26860083)
chr1 (379-426)||(24977271-24977318)
[»] chr2 (10 HSPs)
chr2 (357-466)||(30217482-30217592)
chr2 (379-466)||(4446852-4446940)
chr2 (389-459)||(19908821-19908890)
chr2 (388-449)||(34511999-34512060)
chr2 (379-465)||(30709141-30709228)
chr2 (389-466)||(31618725-31618801)
chr2 (389-442)||(36929757-36929810)
chr2 (433-465)||(6946352-6946384)
chr2 (378-442)||(15709798-15709862)
chr2 (388-440)||(19905921-19905973)
[»] chr4 (5 HSPs)
chr4 (384-464)||(36532661-36532741)
chr4 (388-442)||(48914499-48914553)
chr4 (379-449)||(13493303-13493375)
chr4 (384-463)||(1871313-1871392)
chr4 (403-450)||(5815275-5815322)
[»] chr6 (4 HSPs)
chr6 (385-466)||(2800567-2800649)
chr6 (379-466)||(7215808-7215896)
chr6 (357-428)||(9954321-9954393)
chr6 (386-459)||(17828532-17828605)
[»] chr3 (6 HSPs)
chr3 (386-465)||(52859266-52859346)
chr3 (384-450)||(33632858-33632924)
chr3 (384-451)||(25285809-25285876)
chr3 (387-458)||(44637981-44638052)
chr3 (392-466)||(1995488-1995563)
chr3 (384-449)||(10474412-10474477)
[»] chr8 (2 HSPs)
chr8 (379-465)||(42761744-42761831)
chr8 (378-442)||(18689521-18689585)
[»] chr7 (3 HSPs)
chr7 (357-466)||(47270559-47270668)
chr7 (388-428)||(29844331-29844371)
chr7 (357-418)||(18064564-18064625)
[»] chr5 (3 HSPs)
chr5 (386-423)||(11999599-11999636)
chr5 (388-459)||(29341035-29341106)
chr5 (386-464)||(128573-128651)
[»] scaffold0062 (1 HSPs)
scaffold0062 (378-442)||(58710-58774)


Alignment Details
Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 50593717 - 50593607
Alignment:
Q  18 caatgcggtggaatggatttcttcaactgaccaactgtgaatggtggctttgtgtgtggaacccttgagtgacgattgagtttagaggcagtgacatggc 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50593717 caatgtggtggaatggatttcttcaactgaccaactgtgaatggtggctttgtgtgtggaacccttgagtgacgattgagtttagaggcagtgacatggc 50593618  T
Q  118 ctccagctccc 128  Q
    | |||||||||    
T  50593617 cgccagctccc 50593607  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 378 - 463
Target Start/End: Complemental strand, 32887825 - 32887740
Alignment:
Q  378 atggttggatccactatctattttatgtgtcgatctctctctaaattgtgtgctccatttattttatcaaatgaggaggatcctaa 463  Q
    ||||| ||||||||||| ||||||||||||| |||| |||||||| ||||| |||||||||||||||||||||| |||||||||||    
T  32887825 atggtaggatccactatttattttatgtgtctatctttctctaaactgtgtactccatttattttatcaaatgaagaggatcctaa 32887740  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 1896853 - 1896773
Alignment:
Q  24 ggtggaatggatttcttcaactgaccaactgtgaatggtggctttgtgtgtggaacccttgagtgacgattgagtttagag 104  Q
    ||||||||||||||||||||| | |||||||||||| |||||||| || |||||||||||||| || ||||||||||||||    
T  1896853 ggtggaatggatttcttcaaccggccaactgtgaattgtggctttatgcgtggaacccttgagagatgattgagtttagag 1896773  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 39426241 - 39426313
Alignment:
Q  379 tggttggatccactatctattttatgtgtcgatctctctctaaattgtgtgc-tccatttattttatcaaatg 450  Q
    |||| ||| ||||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||    
T  39426241 tggtaggacccactatctattttatgtgtctatctctctccaaattgtgtacttccatttattttatcaaatg 39426313  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 384 - 465
Target Start/End: Complemental strand, 35534821 - 35534741
Alignment:
Q  384 ggatccactatctattttatgtgtcgatctctctctaaattgtgtgc-tccatttattttatcaaatgaggaggatcctaacc 465  Q
    |||||||||||||||||||||||||  | |||||||||||||||| | ||||||||||||||||||||  |||||| ||||||    
T  35534821 ggatccactatctattttatgtgtc--tatctctctaaattgtgtacttccatttattttatcaaatggagaggatactaacc 35534741  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 449
Target Start/End: Complemental strand, 26860083 - 26860024
Alignment:
Q  390 actatctattttatgtgtcgatctctctctaaattgtgtgctccatttattttatcaaat 449  Q
    ||||||||||||||||||| ||||||||  ||||| ||| ||||||||||||||||||||    
T  26860083 actatctattttatgtgtctatctctcttcaaattatgtactccatttattttatcaaat 26860024  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 426
Target Start/End: Original strand, 24977271 - 24977318
Alignment:
Q  379 tggttggatccactatctattttatgtgtcgatctctctctaaattgt 426  Q
    |||| |||||||| ||||||||| |||||| |||||||||||||||||    
T  24977271 tggtaggatccaccatctattttttgtgtctatctctctctaaattgt 24977318  T

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Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 357 - 466
Target Start/End: Original strand, 30217482 - 30217592
Alignment:
Q  357 aaaagtaaaacataattcatgatggttggatccactatctattttatgtgtcgatctctctctaaattgtgtgc-tccatttattttatcaaatgaggag 455  Q
    |||||||||| |||||| ||||| || |||  |||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||   |||    
T  30217482 aaaagtaaaaaataattaatgatagtgggactcactatctattttatgtgtctatctcactctaaattgtgtgcttccatttattttatcaaatagagag 30217581  T
Q  456 gatcctaaccc 466  Q
    |||||||||||    
T  30217582 gatcctaaccc 30217592  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 379 - 466
Target Start/End: Complemental strand, 4446940 - 4446852
Alignment:
Q  379 tggttggatccactatctattttatgtgtcgatctctctctaaattgtgtgc-tccatttattttatcaaatgaggaggatcctaaccc 466  Q
    |||| ||||||||||||||||||||||||| ||||||||  |||||||   | ||||||||||||||||||||  |||||| |||||||    
T  4446940 tggtaggatccactatctattttatgtgtctatctctcttcaaattgtacacttccatttattttatcaaatggagaggatactaaccc 4446852  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 459
Target Start/End: Original strand, 19908821 - 19908890
Alignment:
Q  389 cactatctattttatgtgtcgatctctctctaaattgtgtgctccatttattttatcaaatgaggaggatc 459  Q
    |||||||||||||||||||| ||||| ||| ||||||  | ||||||||||| |||||||||| |||||||    
T  19908821 cactatctattttatgtgtctatctc-ctccaaattgcatactccatttattatatcaaatgaagaggatc 19908890  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 449
Target Start/End: Complemental strand, 34512060 - 34511999
Alignment:
Q  388 ccactatctattttatgtgtcgatctctctctaaattgtgtgctccatttattttatcaaat 449  Q
    ||||||||||||||||||||| |||| |||| ||||||| | ||| |||||||||| |||||    
T  34512060 ccactatctattttatgtgtctatctttctccaaattgtttcctctatttattttaacaaat 34511999  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 465
Target Start/End: Original strand, 30709141 - 30709228
Alignment:
Q  379 tggttggatccactatctattttatgtgtcgatctctctctaaattgtgtgc-tccatttattttatcaaatgaggaggatcctaacc 465  Q
    |||| ||| ||| ||||||||||||||||| ||||||||| ||||||||| | | |||| ||||||| | |||  |||||||||||||    
T  30709141 tggtaggacccaatatctattttatgtgtctatctctctccaaattgtgtactttcattgattttataagatggagaggatcctaacc 30709228  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 466
Target Start/End: Complemental strand, 31618801 - 31618725
Alignment:
Q  389 cactatctattttatgtgtcgatctctctctaaattgtgtgctccatttattttatcaaatgaggaggatcctaaccc 466  Q
    ||||||||||||||| | || |||| |||| ||||||| | ||||||||  |||||||||||  ||||||||||||||    
T  31618801 cactatctattttatatatctatctttctccaaattgtatactccattt-ctttatcaaatggagaggatcctaaccc 31618725  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 442
Target Start/End: Original strand, 36929757 - 36929810
Alignment:
Q  389 cactatctattttatgtgtcgatctctctctaaattgtgtgctccatttatttt 442  Q
    ||||| |||||||||||||| ||||||||| ||||||  | |||||||||||||    
T  36929757 cactacctattttatgtgtctatctctctccaaattgcatactccatttatttt 36929810  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 465
Target Start/End: Original strand, 6946352 - 6946384
Alignment:
Q  433 catttattttatcaaatgaggaggatcctaacc 465  Q
    |||||||||||||||||| ||||||||||||||    
T  6946352 catttattttatcaaatggggaggatcctaacc 6946384  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 15709798 - 15709862
Alignment:
Q  378 atggttggatccactatctattttatgtgtcgatctctctctaaattgtgtgctccatttatttt 442  Q
    ||||| |||||||||||||||||||| |||  ||||||||| ||||||  |  ||||||||||||    
T  15709798 atggtaggatccactatctattttatatgtttatctctctccaaattgcatattccatttatttt 15709862  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 440
Target Start/End: Original strand, 19905921 - 19905973
Alignment:
Q  388 ccactatctattttatgtgtcgatctctctctaaattgtgtgctccatttatt 440  Q
    |||| |||||||||||||||| ||||||||| ||||||  | |||||||||||    
T  19905921 ccaccatctattttatgtgtctatctctctcaaaattgcatactccatttatt 19905973  T

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Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 384 - 464
Target Start/End: Original strand, 36532661 - 36532741
Alignment:
Q  384 ggatccactatctattttatgtgtcgatctctctctaaattgtgtgctccatttattttatcaaatgaggaggatcctaac 464  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||  ||||||||||||||||| |||  ||||||| ||||    
T  36532661 ggatccactatttattttatgtgtctatctctctctaaattgtgaactccatttattttatcagatggagaggatcttaac 36532741  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 388 - 442
Target Start/End: Complemental strand, 48914553 - 48914499
Alignment:
Q  388 ccactatctattttatgtgtcgatctctctctaaattgtgtgctccatttatttt 442  Q
    |||| |||||||||||||||||||||||||||||||||  | |||||||||||||    
T  48914553 ccacaatctattttatgtgtcgatctctctctaaattgcattctccatttatttt 48914499  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 449
Target Start/End: Original strand, 13493303 - 13493375
Alignment:
Q  379 tggttggatccactatctattttatgtgtcga--tctctctctaaattgtgtgctccatttattttatcaaat 449  Q
    |||| ||||||||||||||||||| ||||| |  |||||||||||||||  | ||||||||||||| ||||||    
T  13493303 tggtgggatccactatctattttacgtgtctatctctctctctaaattgcatactccatttattttgtcaaat 13493375  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 463
Target Start/End: Original strand, 1871313 - 1871392
Alignment:
Q  384 ggatccactatctattttatgtgtcgatctctctctaaattgtgtgctccatttattttatcaaatgaggaggatcctaa 463  Q
    ||||||||||||||| || | |||| ||||||||| ||||||  | ||||||||||||| ||||||   |||||||||||    
T  1871313 ggatccactatctatattttttgtctatctctctccaaattgcatactccatttattttgtcaaattgagaggatcctaa 1871392  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 450
Target Start/End: Complemental strand, 5815322 - 5815275
Alignment:
Q  403 tgtgtcgatctctctctaaattgtgtgctccatttattttatcaaatg 450  Q
    |||||| ||||||||| ||||| ||| |||||||||||||||||||||    
T  5815322 tgtgtctatctctctcaaaattttgtactccatttattttatcaaatg 5815275  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 466
Target Start/End: Complemental strand, 2800649 - 2800567
Alignment:
Q  385 gatccactatctattttatgtgtcgatctctctctaaattgtgt-gctccatttattttatcaaatgaggaggatcctaaccc 466  Q
    |||||||||||||||||||||||| ||||||||| |||||||||   |||||| |||||||||||||  ||||||||||||||    
T  2800649 gatccactatctattttatgtgtctatctctctccaaattgtgtatttccattaattttatcaaatggagaggatcctaaccc 2800567  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 379 - 466
Target Start/End: Complemental strand, 7215896 - 7215808
Alignment:
Q  379 tggttggatccactatctattttatgtgtcgatctctctctaaattgtgtgc-tccatttattttatcaaatgaggaggatcctaaccc 466  Q
    |||| ||| ||||||||||||||||||||| ||||||||| ||||||||  | ||||||||||||||||||||  |||||| |||||||    
T  7215896 tggtaggacccactatctattttatgtgtctatctctctccaaattgtgcacttccatttattttatcaaatggagaggatactaaccc 7215808  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 428
Target Start/End: Complemental strand, 9954393 - 9954321
Alignment:
Q  357 aaaagtaaaacataattcatgat-ggttggatccactatctattttatgtgtcgatctctctctaaattgtgt 428  Q
    |||||||||| |||||| ||||| ||| ||| ||||||||||||||||||||| |||||||| ||| ||||||    
T  9954393 aaaagtaaaaaataattaatgattggtgggacccactatctattttatgtgtctatctctctttaatttgtgt 9954321  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 459
Target Start/End: Complemental strand, 17828605 - 17828532
Alignment:
Q  386 atccactatctattttatgtgtcgatctctctctaaattgtgtgctccatttattttatcaaatgaggaggatc 459  Q
    ||||||||||||||||||||||| ||||||||| ||||||  | ||||| ||||| || ||||||  |||||||    
T  17828605 atccactatctattttatgtgtctatctctctccaaattgcatactccaattattataccaaatgtagaggatc 17828532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 386 - 465
Target Start/End: Original strand, 52859266 - 52859346
Alignment:
Q  386 atccactatctattttatgtgtcgatctctctctaaattgtgt-gctccatttattttatcaaatgaggaggatcctaacc 465  Q
    ||||||||||||||||||||||| |||||||||||||||||||   | ||||||||||||||||||  ||||||| |||||    
T  52859266 atccactatctattttatgtgtctatctctctctaaattgtgtattttcatttattttatcaaatggagaggatcataacc 52859346  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 450
Target Start/End: Original strand, 33632858 - 33632924
Alignment:
Q  384 ggatccactatctattttatgtgtcgatctctctctaaattgtgtgctccatttattttatcaaatg 450  Q
    ||||||||||||||||||||||||| ||||||||| ||||||  ||||||||||||| || ||||||    
T  33632858 ggatccactatctattttatgtgtctatctctctccaaattgcatgctccatttattataccaaatg 33632924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 451
Target Start/End: Complemental strand, 25285876 - 25285809
Alignment:
Q  384 ggatccactatctattttatgtgtcgatctctctctaaattgtgtgctccatttattttatcaaatga 451  Q
    ||||||||||||||||||||||||| |||||||| |||||||  | ||||||| |||||| |||||||    
T  25285876 ggatccactatctattttatgtgtctatctctctataaattgcattctccattaattttaccaaatga 25285809  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 458
Target Start/End: Original strand, 44637981 - 44638052
Alignment:
Q  387 tccactatctattttatgtgtcgatctctctctaaattgtgtgctccatttattttatcaaatgaggaggat 458  Q
    |||||||||||||||||||||  ||||||||| ||||||  | ||||||||||||| |||||||| ||||||    
T  44637981 tccactatctattttatgtgtttatctctctcaaaattgcatactccatttattttgtcaaatgatgaggat 44638052  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 466
Target Start/End: Original strand, 1995488 - 1995563
Alignment:
Q  392 tatctattttatgtgtcgatctctctctaaattgtgtgct-ccatttattttatcaaatgaggaggatcctaaccc 466  Q
    |||||||||| | |||| ||||||||  ||||||||| || |||||||||| || |||||| ||||||||||||||    
T  1995488 tatctattttctatgtctatctctcttcaaattgtgtacttccatttatttgataaaatgaagaggatcctaaccc 1995563  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 449
Target Start/End: Complemental strand, 10474477 - 10474412
Alignment:
Q  384 ggatccactatctattttatgtgtcgatctctctctaaattgtgtgctccatttattttatcaaat 449  Q
    ||||||| ||||||||||||||||| || |||||| ||||||  | ||||||||||| | ||||||    
T  10474477 ggatccattatctattttatgtgtctatatctctcaaaattgcatactccatttattatgtcaaat 10474412  T

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Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 379 - 465
Target Start/End: Original strand, 42761744 - 42761831
Alignment:
Q  379 tggttggatccactatctattttatgtgtcgatctctctctaaattgtgtgc-tccatttattttatcaaatgaggaggatcctaacc 465  Q
    |||| ||||||||||||||||||||||||| ||||||||  |||||| || | |||||||||||||| || ||| |||||||||||||    
T  42761744 tggtaggatccactatctattttatgtgtctatctctcttcaaattgcgtacttccatttattttattaagtgaagaggatcctaacc 42761831  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 18689521 - 18689585
Alignment:
Q  378 atggttggatccactatctattttatgtgtcgatctctctctaaattgtgtgctccatttatttt 442  Q
    ||||| |||||||||||||||||||| |||  ||||||||| ||||||  |  ||||||||||||    
T  18689521 atggtaggatccactatctattttatatgtttatctctctccaaattgcatattccatttatttt 18689585  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 466
Target Start/End: Original strand, 47270559 - 47270668
Alignment:
Q  357 aaaagtaaaacataattcatgatggttggatccactatctattttatgtgtcgatctctctctaaattgtgtgct-ccatttattttatcaaatgaggag 455  Q
    ||||| |||| |||||| |||||||| ||  | | ||||||||| ||||||| |||| ||||||||||||||  | ||||||||||||||||||   |||    
T  47270559 aaaagcaaaaaataattaatgatggtagggcctattatctattt-atgtgtctatctatctctaaattgtgtaattccatttattttatcaaatagagag 47270657  T
Q  456 gatcctaaccc 466  Q
    |||||||||||    
T  47270658 gatcctaaccc 47270668  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 428
Target Start/End: Original strand, 29844331 - 29844371
Alignment:
Q  388 ccactatctattttatgtgtcgatctctctctaaattgtgt 428  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  29844331 ccactatctattttatgtgtctatctctctccaaattgtgt 29844371  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 418
Target Start/End: Original strand, 18064564 - 18064625
Alignment:
Q  357 aaaagtaaaacataattcatgatggttggatccactatctattttatgtgtcgatctctctc 418  Q
    |||||||||| |||||| ||||| || |||  |||| ||||||||||||||| |||||||||    
T  18064564 aaaagtaaaaaataattaatgattgtaggactcactgtctattttatgtgtctatctctctc 18064625  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 423
Target Start/End: Complemental strand, 11999636 - 11999599
Alignment:
Q  386 atccactatctattttatgtgtcgatctctctctaaat 423  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  11999636 atccactatctattttatgtgtctatctctctctaaat 11999599  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 459
Target Start/End: Original strand, 29341035 - 29341106
Alignment:
Q  388 ccactatctattttatgtgtcgatctctctctaaattgtgtgctccatttattttatcaaatgaggaggatc 459  Q
    |||||||||||||| |||||| ||||||||| ||||||  | ||||||||||| || ||||||  |||||||    
T  29341035 ccactatctattttctgtgtctatctctctccaaattgcatactccatttattataccaaatggagaggatc 29341106  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 464
Target Start/End: Original strand, 128573 - 128651
Alignment:
Q  386 atccactatctattttatgtgtcgatctctctctaaattgtgtgctccatttattttatcaaatgaggaggatcctaac 464  Q
    ||||||||| | |||| ||||||  |||||||| ||||||| | |||||||||||||| ||||||| || |||| ||||    
T  128573 atccactattttttttttgtgtccgtctctctccaaattgtattctccatttattttaacaaatgaagaagatcttaac 128651  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 58710 - 58774
Alignment:
Q  378 atggttggatccactatctattttatgtgtcgatctctctctaaattgtgtgctccatttatttt 442  Q
    ||||| |||||||||||||||||||| |||  ||||||||| ||||||  |  ||||||||||||    
T  58710 atggtaggatccactatctattttatatgtttatctctctccaaattgcatattccatttatttt 58774  T

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