View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14711_high_7 (Length: 435)

Name: NF14711_high_7
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14711_high_7
NF14711_high_7
[»] chr7 (5 HSPs)
chr7 (17-418)||(1287079-1287480)
chr7 (314-380)||(19989079-19989145)
chr7 (304-367)||(31448377-31448440)
chr7 (304-382)||(11575439-11575517)
chr7 (317-380)||(5516302-5516365)
[»] chr1 (3 HSPs)
chr1 (314-367)||(11248652-11248705)
chr1 (305-350)||(31922871-31922916)
chr1 (300-380)||(6380146-6380226)
[»] chr2 (5 HSPs)
chr2 (314-366)||(14949243-14949295)
chr2 (304-367)||(12457017-12457080)
chr2 (302-367)||(33810614-33810679)
chr2 (305-367)||(38985126-38985188)
chr2 (304-373)||(39028769-39028838)
[»] chr8 (2 HSPs)
chr8 (303-367)||(24802568-24802632)
chr8 (304-365)||(38125599-38125660)
[»] chr5 (2 HSPs)
chr5 (314-365)||(21743029-21743080)
chr5 (305-352)||(30264578-30264625)
[»] chr3 (4 HSPs)
chr3 (305-367)||(42380564-42380626)
chr3 (305-367)||(42409278-42409340)
chr3 (315-371)||(42380731-42380787)
chr3 (315-371)||(42409445-42409501)
[»] chr6 (1 HSPs)
chr6 (305-361)||(32006908-32006964)
[»] chr4 (1 HSPs)
chr4 (304-380)||(32564829-32564905)


Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Complemental strand, 1287480 - 1287079
Alignment:
Q  17 atggttaatgacaagacaaaatacaatgttgcaccgagacatgtatttgtctcgttgaaagaccgaaatgagagcaacctaactattatcacccatattt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1287480 atggttaatgacaagacaaaatacaatgttgcaccgagacatgtatttatctcgttgaaagaccgaaatgagagcaacctaactattatcacccatattt 1287381  T
Q  117 ataagaacaaagtacgtattgatcaactttgaaaggtcctagaatataaatgaaacctttgatttttgagagatatatatattttggatgcatccagatt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1287380 ataagaacaaagtacgtattgatcaactttgaaaggtcctagaatataaatgaaacctttgatttttgagagatatatatattttggatgcatccagatt 1287281  T
Q  217 ccaaagagttgttgctaatttttgcaattgtattgatcattgataccacacacaaaattaatggatacgtgttaccattggttgcaaatactctcttcgt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1287280 ccaaagagttgttgctaatttttgcaattgtattgatcattgataccacacacaaaattaatggatacgtgttaccattggttgcaaatactctcttcgt 1287181  T
Q  317 ccctatatctaagtactcttttattaaaggcaaatggtgcctacatataggaacgaaggaagtattgtcttacattggaaaatataaaatacagttattt 416  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  1287180 ccctatatctaagcactcttttattaaagacaaatggtgcctacatataagaacggagggagtattgtcttacattggaaaatataaaatacagttattt 1287081  T
Q  417 tt 418  Q
    ||    
T  1287080 tt 1287079  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 19989145 - 19989079
Alignment:
Q  314 cgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatataggaacgaaggaagta 380  Q
    |||||||||||||||| ||  |||||||| ||||||||||||| |||||||||||||| ||| ||||    
T  19989145 cgtccctatatctaagcaccattttattagaggcaaatggtgcttacatataggaacggagggagta 19989079  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 367
Target Start/End: Complemental strand, 31448440 - 31448377
Alignment:
Q  304 atactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatatagg 367  Q
    ||||||||| |||||||||||||||| || ||||||||| | ||||| ||||| ||||||||||    
T  31448440 atactctctccgtccctatatctaagcacccttttattagatgcaaagggtgcttacatatagg 31448377  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 382
Target Start/End: Complemental strand, 11575517 - 11575439
Alignment:
Q  304 atactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatataggaacgaaggaagtatt 382  Q
    ||||||||| |||||||||||||||| |   |||||||| |||||||  |||| |||||||| ||||| ||||||||||    
T  11575517 atactctctccgtccctatatctaagcatcattttattagaggcaaaatgtgcttacatataagaacggaggaagtatt 11575439  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 380
Target Start/End: Complemental strand, 5516365 - 5516302
Alignment:
Q  317 ccctatatctaagtactcttttattaaaggcaaatggtgcctacatataggaacgaaggaagta 380  Q
    |||||||| |||| ||  |||||||||||| ||||||||| |||||||||||||| ||| ||||    
T  5516365 ccctatatgtaagcaccattttattaaaggtaaatggtgcttacatataggaacggagggagta 5516302  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 314 - 367
Target Start/End: Original strand, 11248652 - 11248705
Alignment:
Q  314 cgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatatagg 367  Q
    |||||||||||||||| ||| |||||||| ||||||||||||| ||||||||||    
T  11248652 cgtccctatatctaagcactattttattagaggcaaatggtgcttacatatagg 11248705  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 31922916 - 31922871
Alignment:
Q  305 tactctcttcgtccctatatctaagtactcttttattaaaggcaaa 350  Q
    |||||||| |||||||||||||||| || |||||||||||||||||    
T  31922916 tactctctccgtccctatatctaagcacccttttattaaaggcaaa 31922871  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 380
Target Start/End: Original strand, 6380146 - 6380226
Alignment:
Q  300 gcaaatactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatataggaacgaaggaagta 380  Q
    |||||||||| || | |||||||||||||| || ||||||||| || |||| ||||| ||| || ||||||| ||| ||||    
T  6380146 gcaaatactccctccatccctatatctaagcacccttttattagagacaaaaggtgcttacctagaggaacggagggagta 6380226  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 14949243 - 14949295
Alignment:
Q  314 cgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatatag 366  Q
    |||||||| ||||||| |||||||||||| ||||||||||||| |||||||||    
T  14949243 cgtccctacatctaagcactcttttattagaggcaaatggtgcttacatatag 14949295  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 367
Target Start/End: Original strand, 12457017 - 12457080
Alignment:
Q  304 atactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatatagg 367  Q
    |||||| || |||||||||||||||| || ||||||||| ||||||| ||||| ||||||||||    
T  12457017 atactccctccgtccctatatctaagcacccttttattagaggcaaagggtgcttacatatagg 12457080  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 33810614 - 33810679
Alignment:
Q  302 aaatactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatatagg 367  Q
    |||||||| |||||||||||||| |||| || ||||||||| ||| |||| |||| ||||||||||    
T  33810614 aaatactcccttcgtccctatatgtaagcacccttttattagaggaaaattgtgcttacatatagg 33810679  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 367
Target Start/End: Original strand, 38985126 - 38985188
Alignment:
Q  305 tactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatatagg 367  Q
    ||||| || ||||||||||| |||| |||||||||||| ||| ||||||||| || |||||||    
T  38985126 tactccctccgtccctatatataagcactcttttattagagggaaatggtgcttatatatagg 38985188  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 373
Target Start/End: Complemental strand, 39028838 - 39028769
Alignment:
Q  304 atactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatataggaacgaa 373  Q
    |||||| || |||||||||||| ||| || ||||| ||| | ||||||||||| ||||||||| ||||||    
T  39028838 atactccctccgtccctatatcaaagcacccttttgttagatgcaaatggtgcttacatatagaaacgaa 39028769  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 24802632 - 24802568
Alignment:
Q  303 aatactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatatagg 367  Q
    |||||||| | |||||||||||||||| || ||||||||| | ||||| ||||| ||||||||||    
T  24802632 aatactctatccgtccctatatctaagcacccttttattagatgcaaaaggtgcttacatatagg 24802568  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 38125660 - 38125599
Alignment:
Q  304 atactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatata 365  Q
    |||||| || ||||||||||| |||| || ||||||||| ||||||| ||||| ||||||||    
T  38125660 atactccctccgtccctatatgtaagcacccttttattagaggcaaaaggtgcttacatata 38125599  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 365
Target Start/End: Complemental strand, 21743080 - 21743029
Alignment:
Q  314 cgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatata 365  Q
    |||||||||||||||| |||||||||||| |||||||  |||| ||||||||    
T  21743080 cgtccctatatctaagcactcttttattagaggcaaagagtgcttacatata 21743029  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 30264625 - 30264578
Alignment:
Q  305 tactctcttcgtccctatatctaagtactcttttattaaaggcaaatg 352  Q
    ||||| || |||||||||||||||| |||||||||||| |||||||||    
T  30264625 tactccctccgtccctatatctaagcactcttttattagaggcaaatg 30264578  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 42380626 - 42380564
Alignment:
Q  305 tactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatatagg 367  Q
    ||||| || |||||||||||||||  || ||||||||| ||||||| ||||| ||||||||||    
T  42380626 tactccctccgtccctatatctaaaaacccttttattagaggcaaagggtgcttacatatagg 42380564  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 42409340 - 42409278
Alignment:
Q  305 tactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatatagg 367  Q
    ||||| || |||||||||||||||  || ||||||||| ||||||| ||||| ||||||||||    
T  42409340 tactccctccgtccctatatctaaaaacccttttattagaggcaaagggtgcttacatatagg 42409278  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 42380787 - 42380731
Alignment:
Q  315 gtccctatatctaagtactcttttattaaaggcaaatggtgcctacatataggaacg 371  Q
    ||||||||||||||  || ||||||||| ||||||| | ||| ||||||||||||||    
T  42380787 gtccctatatctaataacccttttattagaggcaaaggatgcttacatataggaacg 42380731  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 42409501 - 42409445
Alignment:
Q  315 gtccctatatctaagtactcttttattaaaggcaaatggtgcctacatataggaacg 371  Q
    ||||||||||||||  || ||||||||| ||||||| | ||| ||||||||||||||    
T  42409501 gtccctatatctaataacccttttattagaggcaaaggatgcttacatataggaacg 42409445  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 32006908 - 32006964
Alignment:
Q  305 tactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctaca 361  Q
    |||||| | ||||||||||||||||||| ||||||||| | ||||| ||||| ||||    
T  32006908 tactctatccgtccctatatctaagtacccttttattagatgcaaacggtgcttaca 32006964  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 32564905 - 32564829
Alignment:
Q  304 atactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatataggaacgaaggaagta 380  Q
    |||||| || ||||||||||| |||| || ||||||||| |||||||  |||| |||||||||| ||| ||| ||||    
T  32564905 atactccctccgtccctatatgtaagcacccttttattagaggcaaagagtgcttacatatagggacggagggagta 32564829  T

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