View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14711_high_9 (Length: 410)
Name: NF14711_high_9
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14711_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Original strand, 43939613 - 43939987
Alignment:
| Q |
19 |
atcacataccataccataatttagctagcctaaactagtaaagatctaattaaagagaaaaagaataaggaacatagacttttgttaataccgggcttct |
118 |
Q |
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| T |
43939613 |
atcacataccataccataatttagctagcctaaactagtaaagatctaattaaagagaaaaagaataaggaacatagaattttgttaataccgggcttct |
43939712 |
T |
|
| Q |
119 |
aacaatgattgaaggtttagcaccaaaattagccaaatctaaagcaatctccataccagaattaccagaaccaacaacaagaacatgttcatctttaaac |
218 |
Q |
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| T |
43939713 |
aacaatgattgaaggtttagcaccaaaattagccaaatctaaagcaatctccataccagaattaccagaaccaacaacaagaacatgttcatctttaaac |
43939812 |
T |
|
| Q |
219 |
tcttttccatttttgtacctagttgaatgaattactttccctttgaaattctccaacccttcaaccacaggtacacgaggttcagctgtttcaccactag |
318 |
Q |
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| T |
43939813 |
tcttttccatttttgtacctagttgaatgaattactttccctttgaaattctccaacccttcaaccacaggtacacgaggttcagctgtttcaccactag |
43939912 |
T |
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| Q |
319 |
caacaaccaagaaccttgcagaatactcctcaacttcaccagaactcttattctcagctttaaccctccatttct |
393 |
Q |
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| T |
43939913 |
caacaaccaagaaccttgcagaatactcctcaacttcaccagaactcttattctcagctttaaccctccatttct |
43939987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 162 - 393
Target Start/End: Original strand, 43927847 - 43928078
Alignment:
| Q |
162 |
gcaatctccataccagaattaccagaaccaacaacaagaacatgttcatctttaaactcttttccatttttgtacctagttgaatgaattactttccctt |
261 |
Q |
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| T |
43927847 |
gcaatttccataccagaattcccagacccaacaacaagaacatgttcatctttaaactctttcccattcttaaacccagttgaatgaatcactttcccag |
43927946 |
T |
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| Q |
262 |
tgaaattctccaacccttcaaccacaggtacacgaggttcagctgtttcaccactagcaacaaccaagaaccttgcagaatactcctcaacttcaccaga |
361 |
Q |
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| T |
43927947 |
taaaactcttcaacccatcaatttcaggtacaaaagggtcactagtttcaccactagctacaaccaaaaaccttccttcatattcctcaacctcaccaga |
43928046 |
T |
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| Q |
362 |
actcttattctcagctttaaccctccatttct |
393 |
Q |
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| T |
43928047 |
ttccttattcttagccttcaccttccatttct |
43928078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 371
Target Start/End: Complemental strand, 15608285 - 15608069
Alignment:
| Q |
159 |
aaagcaatctccataccagaattaccagaaccaacaacaagaacatg----ttcatctttaaactcttttccatttttgtacctagttgaatgaattact |
254 |
Q |
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| T |
15608285 |
aaagcagtttccatgccagaattcccagatccaacaaaaagaacatgttaattcatctttaaactctttctcattcttaaacccagttgaatgaatcact |
15608186 |
T |
|
| Q |
255 |
ttccctttgaaattctccaacccttcaaccacaggtacacgaggttcagctgtttcaccactagcaacaaccaagaaccttgcagaatactcctcaactt |
354 |
Q |
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| T |
15608185 |
tccccattgcatctcttctacccttcaatttcaggcagaaaaggttcactagtttcgccactagccattaccaaaaaccttccatcatattcctcaactt |
15608086 |
T |
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| Q |
355 |
caccagaactcttattc |
371 |
Q |
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|||||||| ||||||| |
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| T |
15608085 |
caccagaatccttattc |
15608069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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