View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14711_low_1 (Length: 626)
Name: NF14711_low_1
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14711_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Original strand, 34275656 - 34276235
Alignment:
| Q |
1 |
aaaatcgaggacacaactgatgtagcaacatatacaaaacaccatcctcttttctcatatcttggtaaaaaccnnnnnnngcattcatttatctttatag |
100 |
Q |
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| T |
34275656 |
aaaatcgaggacacaactgatgtagcaacatatacaaaacaccatcctcttttctcatatcttggtaaaaacctttttttgcattcatttatctttatag |
34275755 |
T |
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| Q |
101 |
cagcttatttgcatatcatttccttattgtttaccaatgcttgtccctactttagagaataagaaatctgatgctgatggctcttcggatgaagaatctg |
200 |
Q |
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| T |
34275756 |
cagcttatttgcatatcatttccttattgtttaccaatgcttgtccctactttagagaataagaaatctgatgctgatggctcttcggatgaagaatctg |
34275855 |
T |
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| Q |
201 |
acaattcaggttagaaattatgttgaagaggaaaaatgtttcatttaactgcattatgttactggtttgtgtgtaatttatctcttactcattagtgacg |
300 |
Q |
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| T |
34275856 |
acaattcaggttagaaattatgttga---------------catttaactgcattatgttactggtttgtgtgtaatttatctcttactcattagtgacg |
34275940 |
T |
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| Q |
301 |
acaannnnnnnatatgctcttttcgcatgattacagaagagctaaatgaagattcaactgaaaactttggtgaagctgtacctgtgcttgaatgcactga |
400 |
Q |
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| T |
34275941 |
acaatttttttatatgctcttttcgcatgattacagaagagctaaatgaagattcaactgaaaactttggtgaagctgtacctgtgcttgaatgcactga |
34276040 |
T |
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| Q |
401 |
tactgatattttctttgaagatcttttttcaaacattgatgatctacaagataggatcgacatgatgcgggatctcatcgattcaatcaggtccaccgat |
500 |
Q |
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| T |
34276041 |
tactgatattttctttgaagatcttttttcaaacattgacgatctacaagataggatcgacgtgatgcgggatctcatcgactcaatcaggtccaccgat |
34276140 |
T |
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| Q |
501 |
gattcaacttcaagtgttggagaagatatctctgattcaaatgagagcacttgcactgacagcaattttgtatgaaattatatgttgaatgctgc |
595 |
Q |
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| T |
34276141 |
gattcagcttcaagtgttggagaagatatctctgattcaaatgagagcacttgcactgacagcaattttgtatgaaattatatgttgaatgctgc |
34276235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 34283050 - 34283116
Alignment:
| Q |
148 |
tactttagagaataagaaatctgatgctgatggctcttcggatgaagaatctgacaattcaggttag |
214 |
Q |
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| T |
34283050 |
tactgtagagaataagaagtctgatgctgatggctctttggatgatgattttgacaatccgggttag |
34283116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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