View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14711_low_13 (Length: 315)

Name: NF14711_low_13
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14711_low_13
NF14711_low_13
[»] chr1 (6 HSPs)
chr1 (1-171)||(38900591-38900761)
chr1 (1-170)||(38898453-38898622)
chr1 (172-243)||(41306688-41306759)
chr1 (171-229)||(5351765-5351823)
chr1 (174-243)||(13414162-13414231)
chr1 (171-207)||(51353162-51353198)
[»] chr3 (3 HSPs)
chr3 (172-315)||(50210887-50211021)
chr3 (172-242)||(23091811-23091881)
chr3 (172-251)||(27117682-27117761)
[»] chr6 (3 HSPs)
chr6 (172-254)||(26603541-26603623)
chr6 (172-243)||(6126459-6126530)
chr6 (172-243)||(13832480-13832551)
[»] chr7 (6 HSPs)
chr7 (171-254)||(32005847-32005930)
chr7 (171-242)||(34152951-34153022)
chr7 (171-242)||(34174102-34174173)
chr7 (172-210)||(22054929-22054967)
chr7 (171-251)||(10656251-10656331)
chr7 (172-208)||(42729884-42729920)
[»] chr8 (4 HSPs)
chr8 (172-254)||(41525184-41525266)
chr8 (172-241)||(3895518-3895587)
chr8 (170-243)||(42424137-42424210)
chr8 (171-243)||(31464958-31465030)
[»] chr4 (2 HSPs)
chr4 (171-221)||(50860388-50860438)
chr4 (171-210)||(7501992-7502031)
[»] scaffold0445 (1 HSPs)
scaffold0445 (172-246)||(6442-6516)
[»] scaffold0062 (1 HSPs)
scaffold0062 (172-208)||(69623-69659)
[»] chr2 (2 HSPs)
chr2 (172-208)||(15721066-15721102)
chr2 (172-252)||(39843116-39843196)
[»] scaffold0494 (1 HSPs)
scaffold0494 (172-243)||(583-654)
[»] chr5 (1 HSPs)
chr5 (171-253)||(27184388-27184470)


Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 38900591 - 38900761
Alignment:
Q  1 cctggagttgaaatgccattttctcgggattcaagtactctatttgatttgggtggtaattgtttgggcatcatgaacactttagttaataaccacaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38900591 cctggagttgaaatgccattttctcgggattcaagtactctatttgatttgggtggtaattgtttgggcatcatgaacactttagttaataaccacaaga 38900690  T
Q  101 tttaaataaattagttcatgaaatgggagagcatggcatgggagggagaatgaggtggtgactggtgaggc 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38900691 tttaaataaattagttcatgaaatgggagagcatggcatgggagggagaaggaggtggtgactggtgaggc 38900761  T

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Target: chr1; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 38898453 - 38898622
Alignment:
Q  1 cctggagttgaaatgccattttctcgggattcaagtactctatttgatttgggtggtaattgtttgggcatcatgaacactttagttaataaccacaaga 100  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38898453 cctggagttgaaataccattttctcaggattcacgtactctatttgatttgggtggtaattgtttgggcatcatgaacactttagttaataaccacaagt 38898552  T
Q  101 tttaaataaattagttcatgaaatgggagagcatggcatgggagggagaatgaggtggtgactggtgagg 170  Q
    ||||||| |||| ||||||||||||||||| |||| ||||||||||||||  ||||| ||||||||||||    
T  38898553 tttaaattaattggttcatgaaatgggagatcatgacatgggagggagaagaaggtgatgactggtgagg 38898622  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 41306688 - 41306759
Alignment:
Q  172 caaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccggg 243  Q
    ||||||||||||||||||||||||||  |||||||| ||   |||||||  |||||||  ||||||||||||    
T  41306688 caaggtaatcaaaaccggaccggacaataaaccggtataggcatgggtttaaggtttagaggttcaaccggg 41306759  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 5351823 - 5351765
Alignment:
Q  171 ccaaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggttta 229  Q
    |||||||||||||||||| | |||||||  |||||||| || ||||||||| |||||||    
T  5351823 ccaaggtaatcaaaaccgaatcggacattgaaccggtgaacttatgggttcaaggttta 5351765  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 13414162 - 13414231
Alignment:
Q  174 aggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccggg 243  Q
    ||||||||||||||||||||||  | |||||||| ||  |||||||||  |||| || ||||||||||||    
T  13414162 aggtaatcaaaaccggaccggagtttaaaccggtctaaatatgggttcagggttcaaaggttcaaccggg 13414231  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 51353162 - 51353198
Alignment:
Q  171 ccaaggtaatcaaaaccggaccggacataaaaccggt 207  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  51353162 ccaaggtaatcagaaccggaccggacatcaaaccggt 51353198  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 172 - 315
Target Start/End: Original strand, 50210887 - 50211021
Alignment:
Q  172 caaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccgggattcaaccgggttgagccggttttagtt 271  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||           ||||||||||||||||| ||||||||||||    
T  50210887 caaggtaatcaaaaccggaccggacataaaaccggtatacctatgggttcgaggtttaa-----------ggattcaaccgggttgaaccggttttagtt 50210975  T
Q  272 aaatatgta--nnnnnnnnatcattatataaaacaataacatacaa 315  Q
    |||||||||          |||||||||||||||||||||||||||    
T  50210976 aaatatgtattttttttttatcattatataaaacaataacatacaa 50211021  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 23091881 - 23091811
Alignment:
Q  172 caaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccgg 242  Q
    ||||||||||||||||||||||||||| |||||||||||   |||||||  ||||||  ||||||||||||    
T  23091881 caaggtaatcaaaaccggaccggacattaaaccggtgtaggcatgggtttaaggttttggggttcaaccgg 23091811  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 27117682 - 27117761
Alignment:
Q  172 caaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccgggattcaacc 251  Q
    |||||||||||||| |||||||||||| ||||| ||||   |||| |||  ||||||||||||| |||| || |||||||    
T  27117682 caaggtaatcaaaatcggaccggacattaaaccagtgttggtatgagtttaaggtttaagggttgaaccagggttcaacc 27117761  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 172 - 254
Target Start/End: Complemental strand, 26603623 - 26603541
Alignment:
Q  172 caaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccgggattcaaccggg 254  Q
    ||||||||| |||||||||||||||||  ||||||||||  ||||||||| |||||||||||| |||||||| ||||||||||    
T  26603623 caaggtaattaaaaccggaccggacattgaaccggtgtaggtatgggttcaaggtttaagggtccaaccggggttcaaccggg 26603541  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 6126459 - 6126530
Alignment:
Q  172 caaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccggg 243  Q
    ||||||||||| ||||||||||||||| ||||||||  |  |||| ||| ||||||||| ||||||||||||    
T  6126459 caaggtaatcagaaccggaccggacattaaaccggtaaaggtatgtgtttgaggtttaaaggttcaaccggg 6126530  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 13832480 - 13832551
Alignment:
Q  172 caaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccggg 243  Q
    ||||||||||||||||||||||||||| |||||||||||   |||||||  ||||||   ||||||||||||    
T  13832480 caaggtaatcaaaaccggaccggacattaaaccggtgtaggcatgggtttaaggttttgaggttcaaccggg 13832551  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 32005847 - 32005930
Alignment:
Q  171 ccaaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccgggattcaaccggg 254  Q
    |||||||||||||||||| ||||| |||  |||||||||||||||||||||||||||| | |||  ||||||| ||||||||||    
T  32005847 ccaaggtaatcaaaaccgaaccggtcattgaaccggtgtacctatgggttcgaggttttaaggtcgaaccggggttcaaccggg 32005930  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 34153022 - 34152951
Alignment:
Q  171 ccaaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccgg 242  Q
    |||||||||||||||||||||||||| | |||||||||||   |||||||  ||||||  ||||||||||||    
T  34153022 ccaaggtaatcaaaaccggaccggacgttaaaccggtgtaggcatgggtttaaggttttggggttcaaccgg 34152951  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 34174102 - 34174173
Alignment:
Q  171 ccaaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccgg 242  Q
    |||||||||||||||||||||||||| | |||||||||||   |||||||  ||||||  ||||||||||||    
T  34174102 ccaaggtaatcaaaaccggaccggacgttaaaccggtgtaggcatgggtttaaggttttggggttcaaccgg 34174173  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 22054929 - 22054967
Alignment:
Q  172 caaggtaatcaaaaccggaccggacataaaaccggtgta 210  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  22054929 caaggtaatcaaaaccggaccggacattaaaccgatgta 22054967  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 10656251 - 10656331
Alignment:
Q  171 ccaaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccgggattcaacc 251  Q
    |||||||||||| ||||||||||| |||  ||||||||| |  ||| |||| |||||||| ||||  |||||| |||||||    
T  10656251 ccaaggtaatcagaaccggaccgggcattgaaccggtgttctcatgagttcaaggtttaaaggttggaccggggttcaacc 10656331  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 42729920 - 42729884
Alignment:
Q  172 caaggtaatcaaaaccggaccggacataaaaccggtg 208  Q
    |||||||||||||||||||||||| || |||||||||    
T  42729920 caaggtaatcaaaaccggaccggatattaaaccggtg 42729884  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 254
Target Start/End: Complemental strand, 41525266 - 41525184
Alignment:
Q  172 caaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccgggattcaaccggg 254  Q
    |||||||||| |||||||||||||||| |||||||| ||  || ||||||||| || || ||||||||||||||  |||||||    
T  41525266 caaggtaatcgaaaccggaccggacattaaaccggtatagataggggttcgagcttcaaaggttcaaccgggatcgaaccggg 41525184  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 3895518 - 3895587
Alignment:
Q  172 caaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccg 241  Q
    ||||||||||||||||| ||||||||| ||||||||||    |||||||| |||||||| ||||||||||    
T  3895518 caaggtaatcaaaaccgaaccggacattaaaccggtgtgttcatgggttcaaggtttaaaggttcaaccg 3895587  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 42424210 - 42424137
Alignment:
Q  170 gccaaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccggg 243  Q
    ||||||||||||| |||||||||| |||| ||||||||  |   ||||||||||||||||| ||||||||||||    
T  42424210 gccaaggtaatcagaaccggaccgaacatcaaaccggtaaaggcatgggttcgaggtttaaaggttcaaccggg 42424137  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 31465030 - 31464958
Alignment:
Q  171 ccaaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccggg 243  Q
    ||||||||||  ||||||||||||||||  ||||| ||||   |||||||| |||||| | ||||||||||||    
T  31465030 ccaaggtaattgaaaccggaccggacattgaaccgatgtaagcatgggttcaaggttttaaggttcaaccggg 31464958  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 50860438 - 50860388
Alignment:
Q  171 ccaaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttc 221  Q
    |||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  50860438 ccaaggtaatcaaaaccggaccggacattaaaccggtgtactcatgggttc 50860388  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 7502031 - 7501992
Alignment:
Q  171 ccaaggtaatcaaaaccggaccggacataaaaccggtgta 210  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  7502031 ccaaggtaatcaaaaccggaccggacattaaatcggtgta 7501992  T

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Target: scaffold0445 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 246
Target Start/End: Original strand, 6442 - 6516
Alignment:
Q  172 caaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccgggatt 246  Q
    ||||||||||||||||||||||||||| ||||| |||||   |||||||  ||||||   |||||||||||||||    
T  6442 caaggtaatcaaaaccggaccggacattaaacccgtgtaggcatgggtttaaggttttgaggttcaaccgggatt 6516  T

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Target: scaffold0062 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 69659 - 69623
Alignment:
Q  172 caaggtaatcaaaaccggaccggacataaaaccggtg 208  Q
    ||||||||||||||||||||||||||| |||||||||    
T  69659 caaggtaatcaaaaccggaccggacattaaaccggtg 69623  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 15721102 - 15721066
Alignment:
Q  172 caaggtaatcaaaaccggaccggacataaaaccggtg 208  Q
    ||||||||||||||||||||||||||| |||||||||    
T  15721102 caaggtaatcaaaaccggaccggacattaaaccggtg 15721066  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 39843116 - 39843196
Alignment:
Q  172 caaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccgggattcaaccg 252  Q
    ||||||||||||||||||||||||| | |||||| ||||   |||||||  ||||||  ||||||||||||| || |||||    
T  39843116 caaggtaatcaaaaccggaccggacgttaaaccgatgtaggcatgggtttaaggttttggggttcaaccggggttgaaccg 39843196  T

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Target: scaffold0494 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 583 - 654
Alignment:
Q  172 caaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccggg 243  Q
    ||||||||||||||||||||||||  | |||||||| ||  |||||||||  |||| || ||||||||||||    
T  583 caaggtaatcaaaaccggaccggagtttaaaccggtttagatatgggttcagggttcaaaggttcaaccggg 654  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 27184470 - 27184388
Alignment:
Q  171 ccaaggtaatcaaaaccggaccggacataaaaccggtgtacctatgggttcgaggtttaagggttcaaccgggattcaaccgg 253  Q
    ||||||||||||||| ||||||||||||  ||||||| ||   |||||||  ||||||| ||||  ||||||| |||||||||    
T  27184470 ccaaggtaatcaaaatcggaccggacattgaaccggtatagtcatgggtttaaggtttaggggtctaaccggggttcaaccgg 27184388  T

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