View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14711_low_14 (Length: 309)
Name: NF14711_low_14
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14711_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 42 - 290
Target Start/End: Original strand, 42086412 - 42086660
Alignment:
| Q |
42 |
ttattttgcccctttgttatgtgtgagtccaagtcatatatatgttacaatggtcatacaaattaacaaggtggtagctaaagttataaaactagaaatg |
141 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42086412 |
ttattttgcacctatgttatgtgtgagtccaagtcatatatatgttacaatggtcatacaaattaacaaggtggtagctaaagttataaaactagaaatg |
42086511 |
T |
|
| Q |
142 |
gtaaaatacatcacactgacacaagcaaatggatggaaaaggcatgcaagcgtgtgcattgcacaaaacagagaaattttcacattattccttcttcttc |
241 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42086512 |
gtaaaacacatcacactgacacaagcaaatgaatggaaaaggcatgcaagcgtgtgcattgcacaaaacagagaaattttcacattattccttcttcttc |
42086611 |
T |
|
| Q |
242 |
caaatctctaaacaaatgaattgagagaggctatcataattctctacct |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42086612 |
caaatctctaaacaaatgaattgagagaggctatcataattctctacct |
42086660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 16512622 - 16512588
Alignment:
| Q |
13 |
agcatagggtgggaaaagtaatagtctaattattt |
47 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16512622 |
agcatagggtgggaaaagtaatagtcttattattt |
16512588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 23348364 - 23348336
Alignment:
| Q |
14 |
gcatagggtgggaaaagtaatagtctaat |
42 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23348364 |
gcatagggtgggaaaagtaatagtctaat |
23348336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 29823285 - 29823313
Alignment:
| Q |
15 |
catagggtgggaaaagtaatagtctaatt |
43 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29823285 |
catagggtgggaaaagtaatagtctaatt |
29823313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University