View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14711_low_18 (Length: 269)
Name: NF14711_low_18
Description: NF14711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14711_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 15508826 - 15509067
Alignment:
| Q |
1 |
ttattgggttgggttggtgaatttagaagcaataatggaattgacaagaaccggttgtgcggttatttatgtcatcctcctttgtgctttggctcaaggg |
100 |
Q |
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| T |
15508826 |
ttattgggttgggttggtgaatttagaagcaataatggaattgacaagaaccggttgtgcggttatttatgtcatcctcctttgtgctttggctcaaggg |
15508925 |
T |
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| Q |
101 |
ggctcagaggggaaggaagatgagctttgtatagaagattcttcttttttatctttcattcatattcatatttatggaaaacaggtacatttatgtattt |
200 |
Q |
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| T |
15508926 |
ggctcagaggggaaggaagatgagctttgtatagaagattcttcttttttatctttcattcatattcatatttatggaaaacaggtacatttatgtattt |
15509025 |
T |
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| Q |
201 |
cataggtttttcttttatattaatccactgcaaatgcgtccc |
242 |
Q |
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| T |
15509026 |
catacgtttttcttttatattaatccaccgcaaatgcgtccc |
15509067 |
T |
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